FC920529

Overview
NameFC920529
Unique NameFC920529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920529_ssr32 microsatellite FC920529_ssr32:32..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE2_ARATH (Glutamate dehydrogenase 2 OS=Arabidopsis thaliana GN=GDH2 PE=1 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.447e-104
Identity = 182/197 (92.39%), Postives = 194/197 (98.48%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNFR+A+RILGLDSK+ERSL+IPFREIKVECTIPKDDG+LVSY+GFRVQHD+ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSP++LS SELERLTRVFTQKIHDLIGIHTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVV+ATE  L
Sbjct:    1 MNALAATNRNFRHASRILGLDSKIERSLMIPFREIKVECTIPKDDGTLVSYIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPRDLSLSELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVFATEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHEA_NICPL (Glutamate dehydrogenase A OS=Nicotiana plumbaginifolia GN=GDHA PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.225e-103
Identity = 183/197 (92.89%), Postives = 191/197 (96.95%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNFR AARILGLDSKLE+SLLIPFREIKVECTIPKDDG+LVSYVGFRVQHD+ARGPMKGGIRYHPEVD DEVNALAQLMTWKTAVADIPYGGAKGGIGC PK+LS SELERLTRVFTQKIHDLIGI+TD+PAPDMGTNAQTMAWILDEYSKFHGHSPA+VTGKPIDLGGSLGREAATGRGVVYATE  L
Sbjct:    1 MNALAATNRNFRQAARILGLDSKLEKSLLIPFREIKVECTIPKDDGTLVSYVGFRVQHDNARGPMKGGIRYHPEVDLDEVNALAQLMTWKTAVADIPYGGAKGGIGCKPKDLSKSELERLTRVFTQKIHDLIGINTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAIVTGKPIDLGGSLGREAATGRGVVYATEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_VITVI (Glutamate dehydrogenase OS=Vitis vinifera GN=GDH PE=2 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 1.769e-102
Identity = 180/197 (91.37%), Postives = 190/197 (96.45%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNFR+A+RILGLDSKLE+SLLIPFREIKVECTIPKDDGSL +YVGFRVQHD+ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAV DIPYGGAKGGIGC+PK+LS SELERLTRVFTQKIHDLIG HTD+PAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPI LGGSLGREAATGRGVV+ATE  L
Sbjct:    1 MNALAATNRNFRHASRILGLDSKLEKSLLIPFREIKVECTIPKDDGSLATYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVVDIPYGGAKGGIGCTPKDLSMSELERLTRVFTQKIHDLIGTHTDVPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIALGGSLGREAATGRGVVFATEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_MAIZE (Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 4.819e-100
Identity = 175/197 (88.83%), Postives = 190/197 (96.45%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAATSRNF+ AA++LGLDSKLE+SLLIPFREIKVECTIPKDDG+L SYVGFRVQHD+ARGPMKGGIRYH EVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGCSP +LS SELERLTRVFTQKIHDLIGIHTD+PAPDMGTN+QTMAWILDEYSKFHG+SPAVVTGKP+DLGGSLGR+AATGRGV++ATE  L
Sbjct:    1 MNALAATSRNFKQAAKLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASYVGFRVQHDNARGPMKGGIRYHHEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPGDLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTNSQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLGRDAATGRGVLFATEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_SOLLC (Glutamate dehydrogenase OS=Solanum lycopersicum GN=GDH1 PE=2 SV=1)

HSP 1 Score: 361.688 bits (927), Expect = 2.391e-99
Identity = 174/197 (88.32%), Postives = 188/197 (95.43%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNF+ AAR+LGLDSKLE SLLIPFREIKVECTIPKDDG+L S+VGFRVQHD+ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGCSP +LS SELERLTRVFTQKIHDLIGIHTD+PAPDMGTN QTMAWILDEYSKFHG+SPAVVTGKP+DLGGSLGR+AATGRG ++ATE  L
Sbjct:    1 MNALAATNRNFKLAARLLGLDSKLELSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPSDLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTNPQTMAWILDEYSKFHGYSPAVVTGKPVDLGGSLGRDAATGRGALFATEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_ARATH (Probable glutamate dehydrogenase 3 OS=Arabidopsis thaliana GN=GSH3 PE=1 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 3.123e-99
Identity = 174/197 (88.32%), Postives = 187/197 (94.92%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNF+ A+R+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHD+ARGPMKGGIRYHPEV+PDEVNALAQLMTWKTAVA IPYGGAKGGIGC P ELS SELERLTRVFTQKIHDLIGIHTD+PAPDMGT  QTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGR+AATGRGV++ATE  L
Sbjct:    1 MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSELSLSELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHEB_NICPL (Glutamate dehydrogenase B OS=Nicotiana plumbaginifolia GN=GDHB PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.550e-98
Identity = 171/197 (86.80%), Postives = 188/197 (95.43%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNF+ A+R+LGLDSKLE+ LLIPFREIKVECTIPKDDGSL +++GFRVQHD+ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA+IPYGGAKGGIGCSP +LS SELERLTRVFTQKIHDLIG+HTD+PAPDMGTN QTMAWILDEYSKFHG+SPAVVTGKPIDLGGSLGR+AATGRGV++A E  L
Sbjct:    1 MNALAATNRNFKLASRLLGLDSKLEQCLLIPFREIKVECTIPKDDGSLATFIGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCSPSDLSISELERLTRVFTQKIHDLIGVHTDVPAPDMGTNPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFAAEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE1_ARATH (Glutamate dehydrogenase 1 OS=Arabidopsis thaliana GN=GDH1 PE=1 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.024e-98
Identity = 173/197 (87.82%), Postives = 186/197 (94.42%), Query Frame = 3
Query:  129 MNALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGREAATGRGVVYATELYL 719
            MNALAAT+RNF+ AAR+LGLDSKLE+SLLIPFREIKVECTIPKDDG+L S+VGFRVQHD+ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVA IPYGGAKGGIGC P +LS SELERLTRVFTQKIHDLIGIHTD+PAPDMGT  QTMAWILDEYSKFHG+SPAVVTGKPIDLGGSLGR+AATGRGV++ TE  L
Sbjct:    1 MNALAATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAKIPYGGAKGGIGCDPSKLSISELERLTRVFTQKIHDLIGIHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVMFGTEALL 197          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE41_HALSA (NAD-specific glutamate dehydrogenase A OS=Halobacterium salinarium GN=gdhA PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.402e-51
Identity = 102/195 (52.31%), Postives = 128/195 (65.64%), Query Frame = 3
Query:  132 NALAATSRNFRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSLGREAATGRGVVYATEL 713
            +AL    R   +AA  L +D  +   L  P +  +V   I +DDG++  + G+R QHD  RGP KGG+RYHP+V  DE   L   MTWK AV D+P+GGAKGG+  +PKELS  E ERLTR FTQ+I D+IG + DIPAPDMGT+ QTMAW++D YS   G  +P VVTGKP  +GGS GRE A GR V   T+L
Sbjct:   26 SALETARRQLYHAASYLDIDQNIVERLKYPKKVHEVTIPIERDDGTVEVFTGYRAQHDSVRGPYKGGLRYHPDVTRDECVGLGMWMTWKCAVMDLPFGGAKGGVAVNPKELSPEEKERLTRRFTQEIRDVIGPNQDIPAPDMGTDPQTMAWLMDAYSMQEGETTPGVVTGKPPVVGGSEGREEAPGRSVAIITQL 220          
BLAST of FC920529 vs. ExPASy Swiss-Prot
Match: DHE3_THEMA (Glutamate dehydrogenase OS=Thermotoga maritima GN=gdhA PE=1 SV=4)

HSP 1 Score: 197.208 bits (500), Expect = 7.801e-50
Identity = 100/180 (55.56%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  159 FRNAARILGLDSKLERSLLIPFREIKVECTIPKDDGSLVSYVGFRVQHDDARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVADIPYGGAKGGIGCSPKELSNSELERLTRVFTQKIHDLIGIHTDIPAPDMGTNAQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGREAATGRGV 695
            F  AA ++ L+S L   L  P R + VE  +  DDG +  + G+RVQH+ ARGP KGGIRYHP+V  DEV ALA  MTWKTAV ++P+GG KGG+   PK+LS +ELERL+R F  +I  +IG + DIPAPD+ TNA  MAW +D YS   GH+   +VTGKP++LGGS GRE ATGRGV
Sbjct:   14 FNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPDVNTNADVMAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGV 193          
The following BLAST results are available for this feature:
BLAST of FC920529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DHE2_ARATH1.447e-10492.39Glutamate dehydrogenase 2 OS=Arabidopsis thaliana ... [more]
DHEA_NICPL1.225e-10392.89Glutamate dehydrogenase A OS=Nicotiana plumbaginif... [more]
DHE3_VITVI1.769e-10291.37Glutamate dehydrogenase OS=Vitis vinifera GN=GDH P... [more]
DHE3_MAIZE4.819e-10088.83Glutamate dehydrogenase OS=Zea mays GN=GDH1 PE=1 S... [more]
DHE3_SOLLC2.391e-9988.32Glutamate dehydrogenase OS=Solanum lycopersicum GN... [more]
DHE3_ARATH3.123e-9988.32Probable glutamate dehydrogenase 3 OS=Arabidopsis ... [more]
DHEB_NICPL1.550e-9886.80Glutamate dehydrogenase B OS=Nicotiana plumbaginif... [more]
DHE1_ARATH2.024e-9887.82Glutamate dehydrogenase 1 OS=Arabidopsis thaliana ... [more]
DHE41_HALSA5.402e-5152.31NAD-specific glutamate dehydrogenase A OS=Halobact... [more]
DHE3_THEMA7.801e-5055.56Glutamate dehydrogenase OS=Thermotoga maritima GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32009E12EF RVDevelop1 Citrus clementina cDNA clone C32009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920529 ID=FC920529; Name=FC920529; organism=Citrus clementina; type=EST; length=743bp
GATTCATTCACATTCGCATTCACAAAAGCTAATTCATTCATTCATTCATT
CATATATTCTTGTTCAAAAGCCCCATCAGTGGTTTTAGCTCTCTTTTAAC
TTGTTTCGAAAGTTTCAGAATCATCGTCATGAACGCTCTTGCAGCAACGA
GCCGTAACTTTCGCAACGCTGCACGCATTCTTGGGCTTGACTCTAAGCTT
GAGAGGAGTCTTCTGATCCCTTTTAGAGAGATCAAAGTGGAGTGCACTAT
CCCCAAAGATGATGGAAGTCTGGTTTCGTACGTTGGATTTAGAGTACAGC
ATGATGACGCACGTGGGCCCATGAAGGGAGGCATCAGATATCATCCTGAG
GTTGATCCTGATGAAGTAAATGCTCTGGCTCAACTAATGACCTGGAAGAC
TGCTGTGGCAGATATACCATATGGTGGAGCAAAGGGTGGAATTGGATGCA
GCCCAAAAGAATTAAGCAACAGTGAGCTGGAACGTCTAACTCGCGTTTTC
ACTCAGAAGATACATGACCTCATTGGAATCCATACTGACATACCAGCCCC
GGACATGGGAACAAATGCCCAGACTATGGCATGGATTTTGGATGAGTACT
CAAAATTTCATGGTCACTCTCCTGCTGTCGTCACAGGAAAGCCCATTGAT
CTTGGCGGATCACTAGGTAGAGAGGCTGCAACTGGGCGTGGTGTCGTTTA
TGCTACAGAGCTCTACTTGCTGAACATGGACAGGCATTAGGGA
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