FC920530

Overview
NameFC920530
Unique NameFC920530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920530 vs. ExPASy Swiss-Prot
Match: FK117_ARATH (F-box/kelch-repeat protein At5g42350 OS=Arabidopsis thaliana GN=At5g42350 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.590e-46
Identity = 100/202 (49.50%), Postives = 127/202 (62.87%), Query Frame = 2
Query:  116 MICESPTGEEDSLRRDFEXXXXXXXXXXXXXXXXXNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECGDPXXXXXXXXXEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAXKDG 721
            MI E P G E+S+R+D E                  K  +    +DE+  +G ++ CL++     GC+V A+TGE+  D          EEGKG    CG+EE    +DCFSYGV+E+FWKK+NRKYL   DS ++ R H++LPDDILEMCL+RLPLTSL+NA LVCKKW+ +  T RFLQMRREG  Q PWLFLF A KDG
Sbjct:    2 MISEKPLGVEESIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVEDEEIARG-AVNCLSI---SVGCRV-ADTGEDFEDSSNKRWSSASEEGKGLMTICGTEE--TRLDCFSYGVRERFWKKNNRKYLA--DSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDG 194          
BLAST of FC920530 vs. ExPASy Swiss-Prot
Match: FK118_ARATH (F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 100/203 (49.26%), Postives = 128/203 (63.05%), Query Frame = 2
Query:  116 MICESPTGEEDSLRRDFEXXXXXXXXXXXXXXXXXNKNLRNYDGDDEDDVKGVSLKCLTLYGRGGGCKVGAETGEECG-DPXXXXXXXXXEEGKGYKPFCGSEEIGVGVDCFSYGVKEKFWKKSNRKYLELEDSVRNSRMHIFLPDDILEMCLVRLPLTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAXKDG 721
            MI E P GEE S+R+D E                  K  +    +DE+  +G ++ CL++     GC+V A+TGE+   D          E+GKG    CG+EEI +  DCFSYGV+E+FWKK+NR+YL   DS ++ R H++LPDDILEMCL+RLPLTSL+NA LVCKKW+ +  T RFLQMRREG  Q PWLFLF A KDG
Sbjct:    2 MISEKPLGEE-SIRQDLEVLTVSRRLVKSVSQKLKKKIHKTEVVEDEEVARG-AVNCLSI---SVGCRV-ADTGEDFEEDLSNKRWSSASEDGKGLMTICGTEEIRL--DCFSYGVRERFWKKNNRRYLA--DSGQDYRKHVYLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMRREGSFQTPWLFLFAALKDG 194          
The following BLAST results are available for this feature:
BLAST of FC920530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FK117_ARATH8.590e-4649.50F-box/kelch-repeat protein At5g42350 OS=Arabidopsi... [more]
FK118_ARATH3.990e-4349.26F-box/kelch-repeat protein At5g42360 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC32009F02EF RVDevelop1 Citrus clementina cDNA clone C32009F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920530 ID=FC920530; Name=FC920530; organism=Citrus clementina; type=EST; length=728bp
GGCAGAAACCGATTTTGCTTTCACATTTCTACATCATGTGGGTTTATTGG
ATGAAGAGCTTGTATGAAGATAGAAATGAGAATATGGTTTAGGTTTTGGT
AAGGAAAAGAGAAGAATGATTTGTGAGAGTCCGACTGGCGAGGAGGATTC
TCTTCGTCGGGATTTTGAATCTTTGAGTGTGTCAAAACGGCTTGTTAGAA
GTGTTAGCCGAAAATTGAGGAATAAGAATCTAAGAAACTATGATGGGGAT
GACGAGGATGATGTGAAAGGGGTGTCTTTAAAATGTCTCACATTATATGG
AAGAGGTGGGGGTTGCAAAGTAGGTGCTGAAACTGGAGAGGAATGTGGGG
ATCCGAGTAGTAGGAGGAGGTCAAGTGCTAGTGAAGAAGGAAAGGGATAC
AAACCATTTTGTGGTTCTGAGGAAATAGGAGTGGGAGTGGATTGTTTCTC
ATATGGGGTGAAAGAGAAGTTTTGGAAGAAAAGTAACAGAAAATACTTGG
AACTCGAAGATTCGGTGAGAAATAGCAGGATGCACATTTTTCTTCCGGAT
GACATTCTGGAGATGTGCTTGGTGAGACTCCCATTGACGAGTCTTATGAA
TGCTCGCCTTGTGTGCAAGAAATGGAGATACTTGACTACCACTCCTCGGT
TTCTGCAGATGAGACGGGAAGGTTTGCATCAAAATCCTTGGTTGTTTCTG
TTTGGTGCTGNTAAGGATGGCTATTGCT
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