FC920538

Overview
NameFC920538
Unique NameFC920538
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14094 contig Ccv1_Contig14094:1..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAT (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_0879 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAE (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain Newman) GN=NWMN_0792 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAC (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain COL) GN=SACOL0922 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA8 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00855 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA3 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0825 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.574e-20
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  SE+++    +A VK++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSEQIISRLKAANVKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_NEUCR (2-nitropropane dioxygenase OS=Neurospora crassa GN=ncd-2 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.685e-20
Identity = 66/194 (34.02%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  200 RKTRSLTERPF----GVGVVLAFPHNENIKAILSEKVAVL-----QVSW---------------GEYSEELVLEA-HSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGHVIGQ-DGLISLLPMVVDLIG----DRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRESWLKWTN 691
            R    LT+RP     G+GV L   H  ++  +    + +L     Q  W                + + + ++EA H++G  V  QVG+  +ARKA   G D I+ QG +AGGH +    G++SL+P V D++     +R++ ++AAGG+ D RG V AL LGA+G+ LGTRF  + E+ + PE+R   +  TN
Sbjct:   83 RSRLGLTDRPLTPLPGIGVGLILTHTISVPYVTDTVLPILIEHSPQAVWLFANDPDFEASSEPGAKGTAKQIIEALHASGFVVFFQVGTVKDARKAAADGADVIVAQGIDAGGHQLATGSGIVSLVPEVRDMLDREFKEREVVVVAAGGVADGRGVVGALGLGAEGVVLGTRFTVAVEA-STPEFRRKVILETN 275          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAS (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0791 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.580e-20
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  SE ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPSESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAR (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0883 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIKRLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAAN (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain N315) GN=SA0781 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
BLAST of FC920538 vs. ExPASy Swiss-Prot
Match: 2NPD_STAA9 (Probable 2-nitropropane dioxygenase OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_0919 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 54/144 (37.50%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  269 NIKAILSEKVAVLQVSWGEYSEELVLEAHSAGVKVVPQVGSFDEARKAVNAGVDAIIVQGREAGGH---------VIGQDGLISLLPMVVDLIGDRDIPIIAAGGIVDARGYVAALSLGAQGIRLGTRFVASEESYAHPEYRES 673
            +I  I+ ++V V   ++G  +E ++     A +K++    S DEA     AG+DAI+ QG EAGGH          +   G ISL+P +VD++    IP+IAAGGI+D RG +A++ LGA+G+++GT F+ S++S A    R++
Sbjct:  117 HIDTIIKKQVPVCCFTFGIPNESIIERLKEANIKLIGTATSVDEAIANEKAGMDAIVAQGSEAGGHRGSFLKPKNQLPMVGTISLVPQIVDVVS---IPVIAAGGIMDGRGVLASIVLGAEGVQMGTAFLTSQDSNASELLRDA 257          
The following BLAST results are available for this feature:
BLAST of FC920538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
2NPD_STAAT1.574e-2038.89Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAE1.574e-2038.89Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAC1.574e-2038.89Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA81.574e-2038.89Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA31.574e-2038.89Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_NEUCR2.685e-2034.022-nitropropane dioxygenase OS=Neurospora crassa GN... [more]
2NPD_STAAS4.580e-2038.19Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAR1.020e-1937.50Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAAN1.333e-1937.50Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]
2NPD_STAA91.333e-1937.50Probable 2-nitropropane dioxygenase OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionC32009F11EF RVDevelop1 Citrus clementina cDNA clone C32009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920538 ID=FC920538; Name=FC920538; organism=Citrus clementina; type=EST; length=709bp
GACAGTTCATTTGTATACTTTTCAGTTTACTCTAATGGGTTGGAGAGGAA
TGCTGGGTTTCGAGTATGGGATTGTTCAGGCACCATTGGGACCTGATATT
TCAGGCCCGGAGCTTGTAGCTGCTGTTGCTAATGCCGGTGGTCTTGGTCT
TCTTAGAGCCCCCGATTGGGAAGCACCAGATTACTTGAGGGATCTGATAA
GGAAGACAAGATCATTAACAGAGCGACCATTTGGGGTTGGTGTGGTTCTA
GCATTTCCCCACAACGAAAATATAAAGGCTATACTTAGTGAAAAAGTAGC
AGTTTTGCAAGTTTCCTGGGGTGAATATTCAGAGGAGCTCGTTCTTGAAG
CTCATAGTGCTGGAGTCAAAGTTGTCCCCCAAGTTGGGAGTTTTGACGAA
GCAAGAAAAGCAGTTAACGCAGGTGTAGATGCAATTATAGTCCAAGGACG
TGAAGCTGGGGGCCATGTAATTGGACAGGATGGTTTGATTTCCTTATTGC
CAATGGTGGTTGATCTTATCGGGGATCGAGATATTCCAATAATTGCTGCA
GGTGGTATTGTGGATGCACGTGGTTATGTTGCAGCCCTGTCTCTTGGTGC
TCAAGGCATCCGCTTAGGCACAAGGTTTGTGGCAAGTGAGGAAAGCTATG
CGCATCCTGAGTACAGAGAAAGTTGGTTGAAATGGACAAACTGAATATCA
GATGTATTT
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