FC920539

Overview
NameFC920539
Unique NameFC920539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length189
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1696 contig Ccv1_Contig1696:192..380. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920539 vs. ExPASy Swiss-Prot
Match: LGUL_BRAOG (Putative lactoylglutathione lyase OS=Brassica oleracea var. gemmifera PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.287e-23
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 3
Query:    3 RDVPEEKYSNAFLGFGPEQSHFVAQLTYNYGVTSYDIGTGSGHFAIATEDVYKLAENIRAKG 188
            RDVPEEKYSNAFLGFGPE S+FV +LTYNYGV+SYDIGTG GHFAI+T+DV K+ E +RAKG
Sbjct:   47 RDVPEEKYSNAFLGFGPETSNFVVELTYNYGVSSYDIGTGFGHFAISTQDVSKMVEAVRAKG 108          
BLAST of FC920539 vs. ExPASy Swiss-Prot
Match: LGUL_ORYSJ (Lactoylglutathione lyase OS=Oryza sativa subsp. japonica GN=GLX-I PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.608e-22
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 3
Query:    3 RDVPEEKYSNAFLGFGPEQSHFVAQLTYNYGVTSYDIGTGSGHFAIATEDVYKLAENIRA 182
            RDVPEEKY+NAFLGFGPE ++F  +LTYNYGV  YDIG G GHFAIATEDVYKLAE I++
Sbjct:   54 RDVPEEKYTNAFLGFGPEDTNFALELTYNYGVDKYDIGAGFGHFAIATEDVYKLAEKIKS 113          
BLAST of FC920539 vs. ExPASy Swiss-Prot
Match: LGUL_SALTY (Lactoylglutathione lyase OS=Salmonella typhimurium GN=gloA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.630e-11
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 3
Query:   12 PEEKYSNAFLGFGPEQSHFVAQLTYNYGVTSYDIGTGSGHFAIATEDVYKLAENIRAKG 188
            PE KYS AF+G+GPE    V +LTYN+GV SYD+G   GH A++ ++  +  E IR  G
Sbjct:   35 PEYKYSLAFVGYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNG 93          
BLAST of FC920539 vs. ExPASy Swiss-Prot
Match: LGUL_SALTI (Lactoylglutathione lyase OS=Salmonella typhi GN=gloA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.630e-11
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 3
Query:   12 PEEKYSNAFLGFGPEQSHFVAQLTYNYGVTSYDIGTGSGHFAIATEDVYKLAENIRAKG 188
            PE KYS AF+G+GPE    V +LTYN+GV SYD+G   GH A++ ++  +  E IR  G
Sbjct:   35 PEYKYSLAFVGYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNG 93          
The following BLAST results are available for this feature:
BLAST of FC920539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LGUL_BRAOG2.287e-2379.03Putative lactoylglutathione lyase OS=Brassica oler... [more]
LGUL_ORYSJ9.608e-2276.67Lactoylglutathione lyase OS=Oryza sativa subsp. ja... [more]
LGUL_SALTY7.630e-1149.15Lactoylglutathione lyase OS=Salmonella typhimurium... [more]
LGUL_SALTI7.630e-1149.15Lactoylglutathione lyase OS=Salmonella typhi GN=gl... [more]
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Properties
Property NameValue
Genbank descriptionC32009F12EF RVDevelop1 Citrus clementina cDNA clone C32009F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920539 ID=FC920539; Name=FC920539; organism=Citrus clementina; type=EST; length=189bp
AGAGAGACGTCCCGGAAGAGAAATACTCAAATGCCTTTCTTGGATTTGGC
CCCGAACAGTCTCACTTTGTTGCGCAGTTAACGTACAACTATGGTGTAAC
TTCATATGATATTGGAACTGGTTCTGGCCATTTTGCAATTGCAACTGAAG
ATGTTTACAAACTGGCTGAAAACATTCGCGCCAAGGGTG
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