FC920551

Overview
NameFC920551
Unique NameFC920551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920551_ssr79 microsatellite FC920551_ssr79:79..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14159 contig Ccv1_Contig14159:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 4.046e-56
Identity = 103/186 (55.38%), Postives = 130/186 (69.89%), Query Frame = 1
Query:  154 GANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTYXXXXXXXXXDFKSSTEKVTSRTS 711
            G  T G     +ENPF+PKA L+RYW+K +   SP+  FL+SKASPLNAV++AT+SKLA   +L +  P FCS+A LFCFPDL  SLEKH  D  F+VY+ KNFTNYG A  GG +SFKNYS+DGNV  DSFRRYSR++AGH+DKF+ Y  +SNVV++ FN+Y         DF +    V + TS
Sbjct:   22 GGRTFGGGFSAEENPFTPKASLVRYWNKEIRGQSPRSEFLISKASPLNAVDSATFSKLAAANSLPTRFPDFCSAANLFCFPDLGASLEKHDDDVKFSVYDQKNFTNYGNARAGGADSFKNYSKDGNVVTDSFRRYSRNAAGHDDKFTVYGENSNVVEEGFNSYGTFGTGGAGDFTNYQNNVNNPTS 207          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 101/191 (52.88%), Postives = 129/191 (67.54%), Query Frame = 1
Query:  139 VTLAGGANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTYXXXXXXXXXDFKSSTEKVTSRTS 711
            V +AGG   +      + NPF+PKA L+RYW+K +   SP   FLLSKASPL AV +AT++KLA +  L   LP FCS+A LFCFPDL P+LEKH  D  F+VY+ +NFTNYGT   GG +SFK YS++GN   DSFRRYSRD+AGH DKF+ YA +SNVV++ FN+Y         DFK+    V + T+
Sbjct:   18 VVIAGGERLTNGGFSPEINPFTPKASLVRYWNKQIHHQSPGSAFLLSKASPLTAVASATFAKLASENALPDRLPDFCSAANLFCFPDLGPTLEKHSNDVKFSVYDQRNFTNYGTIHPGGADSFKKYSQNGNAVTDSFRRYSRDAAGHEDKFTGYADNSNVVEEKFNSYGTSATGGSGDFKNYQSGVNNPTT 208          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.377e-48
Identity = 95/169 (56.21%), Postives = 119/169 (70.41%), Query Frame = 1
Query:  139 VTLAGGANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSP-SLEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTY 642
            V  AG   T+G++    ENPF+PKA L+RYW+  ++ +SPKP F LSKASPL AV++  ++ LA    L++    FCS+AKLFCFP+L+  SLEKHG D NFA Y  KNFTNYG+  L G +SFKNYS   N+ VDSFRRYSR+SAGH+D F+ YA   NV D SF TY
Sbjct:   21 VHFAGAKQTAGNITPS-ENPFTPKASLIRYWNNHINGDSPKPSFFLSKASPLTAVDSTRFASLASNHALNTHHSDFCSAAKLFCFPELAAHSLEKHGDDVNFAAYSGKNFTNYGSDRLSGADSFKNYSGGDNIAVDSFRRYSRNSAGHDDGFTNYAGEVNVADQSFTTY 188          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.483e-47
Identity = 99/168 (58.93%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  145 LAGGANTSGDVLKGKENPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKL-AEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLG-GVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTY 642
            + GG   SG       NPF+PK YL+RYW K +S + PKP FLL+KASPLNA + ATY+KL A+Q  L++ L +FCSSA L C PDLSPSLEKH  D +FA Y +KNFTNYGT   G GVN+FKNYSE  N+ V+SFRRY R S   N KF  YAS  NV+D SFN+Y
Sbjct:   25 VVGGDGESG-------NPFTPKGYLIRYWKKQISNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALTTQLHTFCSSANLMCAPDLSPSLEKHSGDIHFATYSDKNFTNYGTNEPGIGVNTFKNYSEGENIPVNSFRRYGRGSPRDN-KFDNYASDGNVIDQSFNSY 184          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.595e-44
Identity = 95/152 (62.50%), Postives = 111/152 (73.03%), Query Frame = 1
Query:  193 NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKL-AEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLG-GVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTY 642
            NPF+PK Y++RYW+K VS + PKP FLL+KASPLNA + ATY+KL A+Q  LS+ L SFCSSA L C PDL PSLEKH  D +F  Y NKNFTNYGT   G GVN+FKNYSED +  V+SFRRY R S   N KF  YA   NV+D SFN+Y
Sbjct:   35 NPFTPKGYVIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNALSTHLQSFCSSANLMCAPDLLPSLEKHTGDIHFTTYGNKNFTNYGTNEPGIGVNTFKNYSEDAS--VNSFRRYGRGSPRDN-KFDNYAPDGNVIDQSFNSY 183          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.070e-40
Identity = 93/168 (55.36%), Postives = 115/168 (68.45%), Query Frame = 1
Query:  163 TSGDVLKGKE-----NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKL-AEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGADANFAVYENKNFTNYGTAGLG-GVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAY-ASHSNVVDDSFNTY 642
            +S DV+  K+     NPF+PK YL+RYW+K VS + PKP FLL+KASPLNA + ATY+KL A+Q   ++ L SFCSSA L C  DL PSLEKH  D +F  Y +KNFTNYGT   G G NSFKNY+E+ N  V+SFRRY RDS  H+++F  Y A   N    SFN+Y
Sbjct:   20 SSLDVVVAKDGDESGNPFTPKGYLIRYWNKHVSNDLPKPWFLLNKASPLNAAQYATYTKLVADQNAFTTHLQSFCSSANLMCALDLLPSLEKHKGDVHFVSYGDKNFTNYGTKESGLGFNSFKNYTEEENFPVNSFRRYGRDSP-HDNQFDNYGAPGGNTPVQSFNSY 186          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.442e-26
Identity = 64/157 (40.76%), Postives = 86/157 (54.78%), Query Frame = 1
Query:  193 NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPS-------LEKHGADANFAVYENKNFTNYGTAGLGGVNSFKNYSEDGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTY 642
            NPF+ KA  +RYW++ V  N P P F ++K SPL A + A+++       L  +LP  C+ A L C P  S +       +   G    F  Y N NFTNYG+ G+GG + F  YS D NV  DSFRRY RDS    D F++Y +  NVV  +F +Y
Sbjct:   29 NPFTAKAAFIRYWNRRVPNNRPHPAFFVAKLSPLQAADAASFAA-----ALPRLLPPLCARAALLC-PSASDTETAASLAVGGGGGGGPFKGYSNANFTNYGSGGVGGADGFSAYSPDLNVVGDSFRRYGRDSTRRVDTFASYEAEGNVVTANFTSY 179          
BLAST of FC920551 vs. ExPASy Swiss-Prot
Match: BURPE_ORYSJ (BURP domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=BURP14 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 65/182 (35.71%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  193 NPFSPKAYLMRYWDKTVSKNSPKPHFLLSKASPLNAVETATYSKLAEQKTLSSVLPSFCSSAKLFCFPDLSPSLEKHGAD-------------------------ANFAVYENKNFTNYGTAGLGGVNSFKNYSE-------DGNVEVDSFRRYSRDSAGHNDKFSAYASHSNVVDDSFNTY 642
            +PF+ KA  +RYW++ V  N P P F  +K SPL+A + A +S LA    L S + +FC++A L C      S  K  +D                         A F  YEN NF++YG +G GG + F  YS         G   VDSFRRY + S G ND F++Y +  NV   SF +Y
Sbjct:   64 SPFTAKAAFVRYWNRKVHSNRPHPAFFFAKLSPLSAPDAAAFSTLAAAGQLGSRIRAFCAAASLLCPTTPGSSWSKSSSDGDGAAAAAAPAGGGGGGGGGGDGGAAPFKNYENGNFSSYGNSGGGGADQFAVYSSGQSNGGGGGGGGVDSFRRYGKGSQGRNDSFTSYEAGGNVGTSSFTSY 245          
The following BLAST results are available for this feature:
BLAST of FC920551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
JP650_ARATH4.046e-5655.38Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH3.787e-5452.88Probable polygalacturonase non-catalytic subunit J... [more]
Y639_ARATH2.377e-4856.21Probable polygalacturonase non-catalytic subunit A... [more]
GP1_SOLLC4.483e-4758.93Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
GP2_SOLLC1.595e-4462.50Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP3_SOLLC1.070e-4055.36Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
BURPC_ORYSJ7.442e-2640.76BURP domain-containing protein 12 OS=Oryza sativa ... [more]
BURPE_ORYSJ2.647e-2335.71BURP domain-containing protein 14 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC32009H01EF RVDevelop1 Citrus clementina cDNA clone C32009H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920551 ID=FC920551; Name=FC920551; organism=Citrus clementina; type=EST; length=721bp
GCAACCGACAAACATTCTTCTTCGTCTCAGTTGGAAGAAATAAAAATGAA
CGCAAAACCTAAGCCCATGGAGTCTCTCCTCTCTCTCTTCTCCTTCTTCT
TCGTGCTGCTTTATTCATTTCTCCTCTTAAGTGTTAAGGTTACGTTGGCA
GGTGGCGCCAATACTTCCGGCGACGTCTTAAAAGGCAAAGAAAACCCATT
CTCACCAAAGGCTTACCTGATGCGATACTGGGACAAAACCGTGAGCAAAA
ATTCACCAAAACCACACTTTCTTCTCTCAAAAGCCTCCCCATTGAACGCC
GTCGAAACGGCGACTTATTCCAAACTCGCCGAGCAGAAAACCCTCTCCTC
AGTCCTCCCGTCCTTTTGCTCGTCCGCTAAACTCTTCTGCTTCCCCGACT
TGTCGCCGAGTCTCGAAAAACACGGCGCCGACGCCAACTTCGCTGTTTAT
GAAAACAAGAACTTCACCAATTACGGAACCGCTGGACTCGGTGGAGTCAA
CTCCTTCAAGAACTACTCGGAGGACGGAAACGTCGAAGTGGACTCGTTCC
GCCGATACAGCCGCGACTCAGCGGGTCACAATGACAAATTCTCCGCTTAC
GCCTCTCATAGCAACGTTGTCGACGACAGCTTCAACACATACGGAACCGG
CGCCACTGGTGGCGCTGGTGATTTCAAGAGTTCAACAGAGAAAGTCACGT
CCCGAACCTCAGATCACATCG
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