FC920562

Overview
NameFC920562
Unique NameFC920562
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12667 contig Ccv1_Contig12667:280..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_DICDI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 1.805e-104
Identity = 179/241 (74.27%), Postives = 203/241 (84.23%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKV-SDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRKTILVQNCLCV 722
            DRIFTNL+G HD +LKGA+ RGDW++TK+++ KG DWI+ E+  SGLRGRGGAGFPSGLKWSFMPK  S  RP YLV+NADE EPGTCKDREIMRHDPHKL+EGCL+AG  MRA AAYIYIRGE+  E K LE+A  EAY AGL+G+NACG+GY FDV++H GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA AGLYGCPTTVTNVETVAV+PTILRRG  WFASFGR         C+
Sbjct:   55 DRIFTNLYGEHDVYLKGAIARGDWYKTKNIIDKGKDWILKEMMASGLRGRGGAGFPSGLKWSFMPKTTSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACAAYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGTKLFCI 295          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Bos taurus GN=NDUFV1 PE=1 SV=2)

HSP 1 Score: 377.867 bits (969), Expect = 3.079e-104
Identity = 177/230 (76.96%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKGA  RGDW++TK+++LKG DWI+ EVK SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WFASFGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4)

HSP 1 Score: 377.481 bits (968), Expect = 4.021e-104
Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKG++ RGDW++TK+++LKG DWI+ E+K SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKLLEGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WFA FGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pongo pygmaeus GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.252e-104
Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKGA+ RGDW++TK+++LKG DWI+ E+K SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WFA FGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_MACFA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.252e-104
Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKGA+ RGDW++TK+++LKG DWI+ E+K SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WFA FGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pan troglodytes GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 8.959e-104
Identity = 174/230 (75.65%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKG++ RGDW++TK+++LKG DWI+ E+K SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WFA FGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 8.959e-104
Identity = 174/230 (75.65%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKGA+ RGDW++TK+++LKG DWI+ E+K SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WF+ FGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGALSRGDWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NDUV1_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Mus musculus GN=Ndufv1 PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.170e-103
Identity = 175/230 (76.09%), Postives = 199/230 (86.52%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGRK 692
            DRIFTNL+G HD  LKGA++RGDW++TK+++LKG DWI+ E+K SGLRGRGGAGFP+GLKWSFM K SDGRP YLVVNADE EPGTCKDREIMRHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGS YDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSPTI RRG  WFA FGR+
Sbjct:   39 DRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRE 268          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF_RHOCA (NADH-quinone oxidoreductase subunit F OS=Rhodobacter capsulatus GN=nuoF PE=3 SV=1)

HSP 1 Score: 362.459 bits (929), Expect = 1.339e-99
Identity = 169/229 (73.80%), Postives = 192/229 (83.84%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            DRIFTN++G+HD  LKGAM RG W  T  ++  G DWI+ +VK SGLRGRGGAGFP+GLKWSFMPK SDGRPS+LV+NADESEPGTCKDREIMRHDPH L+EG LIAG  M A AAYIYIRGEYV E++ L+ A  E Y AGL+GKNAC S YDFDV++H+GAGAYICGEETALLESLEGK+G PR+KPPFPA +GLYGCPTTV NVE++AV PTILRRG  WFA  GR
Sbjct:    6 DRIFTNIYGMHDRSLKGAMARGHWDGTAAILGNGRDWIIEQVKASGLRGRGGAGFPTGLKWSFMPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARAAYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGR 234          
BLAST of FC920562 vs. ExPASy Swiss-Prot
Match: NUOF1_RHIME (NADH-quinone oxidoreductase subunit F 1 OS=Rhizobium meliloti GN=nuoF1 PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.625e-98
Identity = 167/229 (72.93%), Postives = 191/229 (83.41%), Query Frame = 3
Query:    3 DRIFTNLHGLHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEVKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPDWFASFGR 689
            DRIFTN++GL D  L+GAM RG W  TK  + KG DWI+NEVK SGLRGRGGAGFP+GLKWSFMPK SDGRP YLVVNADESEPGTCKDR+IMRHDPH L+EGC+IA   M A AAYIY+RGE++ ER+ L+ A  E Y  GLLGKN    GYD D+++H+GAGAYICGEETALLESLEGK+G+PRLKPPFPAN GLYGCPTTV NVE++AV+PTILRRG  W+ SFGR
Sbjct:    6 DRIFTNIYGLKDKSLRGAMARGHWDGTKQFLEKGRDWIINEVKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIMRHDPHTLIEGCVIASFAMGAHAAYIYVRGEFIREREALQAAIDECYEYGLLGKNN-KLGYDIDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCPTTVNNVESIAVTPTILRRGAGWYTSFGR 233          
The following BLAST results are available for this feature:
BLAST of FC920562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NDUV1_DICDI1.805e-10474.27NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_BOVIN3.079e-10476.96NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_HUMAN4.021e-10476.09NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_PONPY5.252e-10476.09NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MACFA5.252e-10476.09NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_PANTR8.959e-10475.65NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_GORGO8.959e-10475.65NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MOUSE1.170e-10376.09NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NUOF_RHOCA1.339e-9973.80NADH-quinone oxidoreductase subunit F OS=Rhodobact... [more]
NUOF1_RHIME5.625e-9872.93NADH-quinone oxidoreductase subunit F 1 OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC32010A04EF RVDevelop1 Citrus clementina cDNA clone C32010A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920562 ID=FC920562; Name=FC920562; organism=Citrus clementina; type=EST; length=725bp
AAGACAGGATTTTCACCAACTTACATGGACTGCATGACCCTTTTCTCAAA
GGTGCCATGAAACGGGGTGATTGGCACAGAACTAAAGACTTGGTACTCAA
GGGTGCAGATTGGATTGTCAATGAAGTCAAGAAGTCTGGTCTCCGCGGAC
GTGGTGGTGCTGGTTTTCCCTCTGGCCTCAAGTGGTCCTTCATGCCCAAG
GTGTCTGATGGCCGTCCTTCGTATCTTGTTGTCAATGCTGATGAAAGTGA
ACCTGGAACCTGTAAAGACAGGGAAATTATGCGGCATGATCCACATAAGT
TGTTGGAGGGCTGCTTGATTGCTGGCGTAGGAATGAGGGCTTCTGCTGCT
TACATTTACATAAGGGGTGAATATGTAAATGAACGTAAAAACCTTGAAAG
AGCGAGGCAAGAAGCTTATGCTGCTGGATTGTTGGGCAAGAATGCCTGCG
GATCTGGTTATGATTTTGATGTGCATATCCACTATGGTGCTGGTGCTTAT
ATTTGTGGTGAAGAGACAGCTCTTTTGGAAAGCCTTGAAGGTAAACAGGG
GAAACCAAGATTGAAGCCTCCTTTCCCTGCTAATGCAGGTTTATATGGTT
GTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGTTTCTCCCACCATT
TTAAGGCGTGGACCGGACTGGTTTGCCAGTTTTGGCAGGAAGACAATTCT
GGTACAAAATTGTTTGTGTGTCGGG
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