FC920600

Overview
NameFC920600
Unique NameFC920600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length644
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:5..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.593e-85
Identity = 155/174 (89.08%), Postives = 165/174 (94.83%), Query Frame = 1
Query:  121 MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            MAG+W+ R SL+V AIV FG LFA SIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD ERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF+DKEVQRD KL PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    1 MAGAWKRRASLIVFAIVLFGSLFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQRDKKLVPYEIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKD 174          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 305.064 bits (780), Expect = 2.054e-82
Identity = 150/172 (87.21%), Postives = 160/172 (93.02%), Query Frame = 1
Query:  127 GSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            G+W  R SL+V  IV FG LFA SIA EEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD ERLIGEAAKN AAVNP+RT+FDVKRLIGRKF+DKEVQRDMKL PYKIVN+DGKPYIQV+I+DGETK+FSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    4 GAWNRRTSLIVFGIVLFGCLFAFSIATEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNLAAVNPERTVFDVKRLIGRKFDDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGETKIFSPEEISAMILTKMKETAEAYLGKKIKD 175          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 299.671 bits (766), Expect = 8.631e-81
Identity = 152/174 (87.36%), Postives = 163/174 (93.68%), Query Frame = 1
Query:  121 MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            MA S+ A  S VVLAI+FFG LFA S AKEEATKLG+VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWV FTDSERLIGEAAKNQAAVNP+RT+FDVKRLIGRKFEDKEVQ+D KL PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    1 MARSFGAN-STVVLAIIFFGCLFAFSTAKEEATKLGSVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKD 173          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.594e-80
Identity = 151/174 (86.78%), Postives = 163/174 (93.68%), Query Frame = 1
Query:  121 MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            MA S+ A  S VVLAI+FFG LFA+S A EEATKLG+VIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWV FTDSERLIGEAAKNQAAVNP+RT+FDVKRLIGRKFEDKEVQ+D KL PY+IVN+DGKPYIQV+I+DGETKVFSPEEISAMILTKMKETAEA+LGKKIKD
Sbjct:    1 MARSFGAN-STVVLAIIFFGCLFALSSAIEEATKLGSVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKD 173          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.246e-79
Identity = 152/174 (87.36%), Postives = 159/174 (91.38%), Query Frame = 1
Query:  121 MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            MA   R   SLVVLAIV  G L A+S AKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTD+ERLIGEAAKN AAVNP+RTIFDVKRLIGRKFEDKEVQRDMKL PYKIV++DGKPYIQV+I+DGE KVFSPEEISAMILTKMKETAEAFLGK IKD
Sbjct:    1 MAACSRRGNSLVVLAIVLLGCLSALSNAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDNERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVSKDGKPYIQVKIKDGEVKVFSPEEISAMILTKMKETAEAFLGKTIKD 174          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 1.378e-78
Identity = 144/169 (85.21%), Postives = 155/169 (91.72%), Query Frame = 1
Query:  136 RARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            RARGS  +L ++  G LFA S+AKEE  KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF DKEVQRDMKL PYKI+N+DGKPYIQV+I+DGE KVFSPEEISAMIL KMK+TAEA+LGKKI D
Sbjct:    3 RARGSAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFADKEVQRDMKLVPYKIINKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKIND 171          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.800e-78
Identity = 143/169 (84.62%), Postives = 155/169 (91.72%), Query Frame = 1
Query:  136 RARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            R RGS  +L ++  G LFA S+AKEE  KLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNP+RTIFDVKRLIGRKF+DKEVQRDMKL PYKI+N+DGKPYIQV+I+DGE KVFSPEEISAMIL KMK+TAEA+LGKKI D
Sbjct:    3 RVRGSAFLLGVLLAGSLFAFSVAKEETKKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFQDKEVQRDMKLVPYKIINKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKIND 171          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.932e-78
Identity = 143/174 (82.18%), Postives = 156/174 (89.66%), Query Frame = 1
Query:  121 MAGSWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 642
            MA +W++R S +   IV  G LFA   AK+EA KLGTVIGIDLGTTYSCVGVYK+G VEIIANDQGNRITPSWVAFT+ ERLIGEAAKNQAA NP+RTIFDVKRLIGRKFEDKEVQ+DMKL PYKIVNRDGKPYIQV++++GETKVFSPEEISAMILTKMKETAE FLGKKIKD
Sbjct:    1 MAVAWKSRASSIAFGIVLLGSLFAFVSAKDEAPKLGTVIGIDLGTTYSCVGVYKDGKVEIIANDQGNRITPSWVAFTNDERLIGEAAKNQAAANPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNRDGKPYIQVKVQEGETKVFSPEEISAMILTKMKETAETFLGKKIKD 174          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 1.812e-54
Identity = 105/169 (62.13%), Postives = 129/169 (76.33%), Query Frame = 1
Query:  130 SWRARGSLVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            SW    S++    + F   F       +   +GTVIGIDLGTTYSCVGV + G VEI+ NDQGNRITPS+VAFTD ERL+G+AAKNQAA NP RTIFD+KRLIGRKF DK+VQ D+K  PYK+V++D KP ++V+++ GE K F+PEEISAMIL KMKETAE +LGKK+
Sbjct:    7 SWALGLSILGFFALLFSAGFVQQAHANDTEAMGTVIGIDLGTTYSCVGVMQKGKVEILVNDQGNRITPSYVAFTDEERLVGDAAKNQAAANPHRTIFDIKRLIGRKFSDKDVQNDIKHFPYKVVSKDDKPVVKVEVK-GEEKTFTPEEISAMILGKMKETAEGYLGKKV 174          
BLAST of FC920600 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.091e-54
Identity = 107/162 (66.05%), Postives = 132/162 (81.48%), Query Frame = 1
Query:  151 LVVLAIVFFGGLFAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 636
            L +L ++ F    A    +EE    G+VIGIDLGTTYSCVGV+K G VEII NDQGNRITPS+VAFT++ERLIGEAAKNQA +NP+ TIFD+KRLIGR+F+D+EVQRDMKL PYKIV+++ KPY+ V+++ GE K +SPEEISAMIL +MKE AEA LGK +
Sbjct:    9 LCLLLLISFAA--AAEKKEEEKKDYGSVIGIDLGTTYSCVGVFKKGKVEIIPNDQGNRITPSYVAFTETERLIGEAAKNQATLNPENTIFDIKRLIGRRFDDEEVQRDMKLLPYKIVSKNNKPYVVVKVK-GEEKTYSPEEISAMILGRMKEIAEASLGKTV 167          
The following BLAST results are available for this feature:
BLAST of FC920600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP5_TOBAC2.593e-8589.08Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
BIP4_TOBAC2.054e-8287.21Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
BIP2_ARATH8.631e-8187.36Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH5.594e-8086.78Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]
BIP_SOLLC1.246e-7987.36Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP2_MAIZE1.378e-7885.21Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
BIP3_MAIZE1.800e-7884.62Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP_SPIOL8.932e-7882.18Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
GRP78_NEUCR1.812e-5462.1378 kDa glucose-regulated protein homolog OS=Neuros... [more]
BIP2_DICDI3.091e-5466.05Luminal-binding protein 2 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionC32010E11EF RVDevelop1 Citrus clementina cDNA clone C32010E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920600 ID=FC920600; Name=FC920600; organism=Citrus clementina; type=EST; length=644bp
GGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACATCGAA
ACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAGGGTA
TAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGGGTCC
CTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTTCAAT
TGCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGATCTTG
GTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGAAATC
ATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCATTCAC
TGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCTGTCA
ATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAAGTTT
GAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGATTGT
GAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGCGAGA
CCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAAGATG
AAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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