FC920601

Overview
NameFC920601
Unique NameFC920601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length374
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14197 contig Ccv1_Contig14197:52..425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: XYL1_ARATH (Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.766e-58
Identity = 101/118 (85.59%), Postives = 109/118 (92.37%), Query Frame = 3
Query:   21 LLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            LL ++GKRPFILSRSTFVGSG YAAHWTGDN+GTW+ L+ SISTMLNFGIFGVPMVGSDICGFYP PTEELCNRWIEVGAFYPFSRDHANYYSPR ELYQW++V  SARNALGM YK+
Sbjct:  534 LLNVQGKRPFILSRSTFVGSGQYAAHWTGDNQGTWQSLQVSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWDTVADSARNALGMRYKI 651          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_ORYSJ (Probable alpha-glucosidase Os06g0675700 OS=Oryza sativa subsp. japonica GN=Os06g0675700 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.507e-45
Identity = 82/119 (68.91%), Postives = 97/119 (81.51%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            ALL   G+RPF+LSRSTFVGSG Y AHWTGDN  TWEDL YSI+TML+FG+FG+PM+G+DICGF    TEELC+RWI++GAFYPFSRDH+   + R ELY WESV  SAR ALG+ Y+L
Sbjct:  510 ALLRDTGRRPFVLSRSTFVGSGRYTAHWTGDNAATWEDLHYSINTMLSFGLFGIPMIGADICGFGGNTTEELCSRWIQLGAFYPFSRDHSAIGTVRRELYLWESVARSARKALGLRYRL 628          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_SPIOL (Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.128e-42
Identity = 78/119 (65.55%), Postives = 92/119 (77.31%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            AL+ L  KRPF+LSRSTF GSG Y AHWTGDN  TW DL YSI +ML+FG+FG+PMVG+DICGF    TEELC RWI++GAFYPFSRDH++  +   ELY+WESV  SAR  LG+ Y L
Sbjct:  534 ALIKLTEKRPFVLSRSTFSGSGKYTAHWTGDNAATWNDLVYSIPSMLDFGLFGIPMVGADICGFLGNTTEELCRRWIQLGAFYPFSRDHSSLGTTYQELYRWESVAASARKVLGLRYTL 652          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_HORVU (Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 2.128e-42
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 3
Query:   36 GKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            G+RPF+LSRSTFVGSG Y A+WTGDN  TW DL+YSI+TML+FG+FG+PM+G+DICGF    TEELC RWI++GAFYPFSRDH+  ++ R ELY W SV  S R ALG+ Y+L
Sbjct:  510 GRRPFVLSRSTFVGSGRYTAYWTGDNAATWGDLRYSINTMLSFGLFGMPMIGADICGFNGNTTEELCGRWIQLGAFYPFSRDHSAIFTVRRELYLWPSVAASGRKALGLRYQL 622          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_BETVU (Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.167e-40
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            AL+    + PF+LSRSTF GSG Y AHWTGDN   W+DL+YSI TMLNFG+FG+PM+G+DICGF  + TEELC RWI++GAFYPFSRDH+   +   ELY WESV  SAR  LG+ Y+L
Sbjct:  538 ALVRPATRGPFLLSRSTFAGSGKYTAHWTGDNAARWDDLQYSIPTMLNFGLFGMPMIGADICGFAESTTEELCCRWIQLGAFYPFSRDHSARDTTHQELYLWESVAASARTVLGLRYEL 656          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: YAJ1_SCHPO (Uncharacterized family 31 glucosidase C30D11.01c OS=Schizosaccharomyces pombe GN=SPAC30D11.01c PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.421e-31
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   42 RPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            RPF+LSRSTFVGSG YAAHW GDNK  W D+  SIS++L F + G+PMVG+D+CG+     EELC RW+ +GAF PF R+H +  S   E ++W SV  ++R+A+ + Y L
Sbjct:  650 RPFLLSRSTFVGSGRYAAHWLGDNKSQWSDMVSSISSILTFNLLGIPMVGADVCGYNGNTDEELCARWMALGAFLPFYRNHNSLGSIPQEPFRWASVAEASRSAIEIRYSL 760          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: AGLU_SCHPO (Alpha-glucosidase OS=Schizosaccharomyces pombe GN=agl1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.421e-31
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            +RPFILSRSTF+GSG Y AHW GDN   W ++ +SIS M+ F + G+PMVG+D+CGF     EELC+RW+ +GAF PF R+H N Y    E Y W SV  ++R A+ + Y L
Sbjct:  624 ERPFILSRSTFLGSGVYGAHWLGDNHSLWSNMFFSISGMIVFNMMGIPMVGADVCGFLGDSDEELCSRWMAMGAFSPFYRNHNNIYQISQEPYTWSSVAEASRRAMYIRYSL 735          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: YFZB_SCHPO (Uncharacterized family 31 glucosidase C1039.11c OS=Schizosaccharomyces pombe GN=SPAC1039.11c PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   42 RPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQWESVPHSARNALGMMYKL 374
            RPFILSRSTFVGSG YAAHW GDN   W ++ +SI   L F + G+PMVG+D+CGF     EELC+RW+ +GAF PF R+H +  S   E Y+WESV  S+R A+ + Y L
Sbjct:  647 RPFILSRSTFVGSGKYAAHWLGDNYSLWSNMIFSIPGALTFNMVGLPMVGADVCGFMGNTDEELCSRWMALGAFLPFYRNHNSLGSISQEPYRWESVAESSRCAMNIRYSL 757          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: SUIS_RABIT (Sucrase-isomaltase, intestinal OS=Oryctolagus cuniculus GN=SI PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 4.162e-30
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 3
Query:   39 KRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDH--ANYYSPRPELYQWES-VPHSARNALGMMYKL 374
            KR FIL+RSTF GSG +AAHW GDN  TWE +++SI+ ML FG+FG+P+VG+DICGF    TEELC RW+++GAFYPFSR+H    +    P  +  +S +  S+R+ L + Y L
Sbjct:  581 KRSFILTRSTFAGSGRHAAHWLGDNTATWEQMEWSITGMLEFGLFGMPLVGADICGFLAETTEELCRRWMQLGAFYPFSRNHNADGFEHQDPAFFGQDSLLVKSSRHYLNIRYTL 695          

HSP 2 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 48/120 (40.00%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQW-ESVPHSARNALGMMYKL 374
            AL    GKR  ++SRST+  +G +A HW GDN   W+++  SI  M+ F +FG+   G+DICGF+      LC RW ++GAFYPF+R+H   ++ R +   W ++     RN L + Y L
Sbjct: 1470 ALQKTTGKRGIVISRSTYPTAGRWAGHWLGDNYARWDNMDKSIIGMMEFSLFGISYTGADICGFFNDSEYHLCTRWTQLGAFYPFARNHNIQFTRRQDPVSWNQTFVEMTRNVLNIRYTL 1589          
BLAST of FC920601 vs. ExPASy Swiss-Prot
Match: LYAG_MOUSE (Lysosomal alpha-glucosidase OS=Mus musculus GN=Gaa PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.065e-29
Identity = 59/120 (49.17%), Postives = 79/120 (65.83%), Query Frame = 3
Query:   18 ALLGLEGKRPFILSRSTFVGSGHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSRDHANYYSPRPELYQW-ESVPHSARNALGMMYKL 374
            AL+   G RPF++SRSTF G G YA HWTGD + +WE L YS+  +L F + GVP+VG+DICGF    +EELC RW ++GAFYPF R+H +  S   E Y++ E+   + R A  + Y L
Sbjct:  586 ALVKTRGTRPFVISRSTFSGHGRYAGHWTGDVRSSWEHLAYSVPDILQFNLLGVPLVGADICGFIGDTSEELCVRWTQLGAFYPFMRNHNDLNSVPQEPYRFSETAQQAMRKAFALRYAL 705          
The following BLAST results are available for this feature:
BLAST of FC920601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
XYL1_ARATH2.766e-5885.59Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 P... [more]
AGLU_ORYSJ3.507e-4568.91Probable alpha-glucosidase Os06g0675700 OS=Oryza s... [more]
AGLU_SPIOL2.128e-4265.55Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1[more]
AGLU_HORVU2.128e-4266.37Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1[more]
AGLU_BETVU1.167e-4063.03Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1[more]
YAJ1_SCHPO6.421e-3153.15Uncharacterized family 31 glucosidase C30D11.01c O... [more]
AGLU_SCHPO6.421e-3152.68Alpha-glucosidase OS=Schizosaccharomyces pombe GN=... [more]
YFZB_SCHPO1.095e-3054.95Uncharacterized family 31 glucosidase C1039.11c OS... [more]
SUIS_RABIT4.162e-3053.04Sucrase-isomaltase, intestinal OS=Oryctolagus cuni... [more]
LYAG_MOUSE2.065e-2949.17Lysosomal alpha-glucosidase OS=Mus musculus GN=Gaa... [more]

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Properties
Property NameValue
Genbank descriptionC32010E12EF RVDevelop1 Citrus clementina cDNA clone C32010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920601 ID=FC920601; Name=FC920601; organism=Citrus clementina; type=EST; length=374bp
ATCGCCGGGCATGAGTAGCTCTTCTAGGGCTCGAAGGCAAGAGGCCATTC
ATATTATCACGCTCTACTTTTGTTGGTTCTGGTCATTATGCCGCACACTG
GACGGGTGATAATAAGGGAACATGGGAAGATCTAAAGTATTCTATTTCAA
CCATGCTGAACTTCGGCATATTTGGGGTTCCGATGGTTGGTTCCGATATA
TGTGGGTTCTATCCTGCCCCAACAGAAGAGCTTTGTAACCGATGGATAGA
AGTAGGTGCATTCTATCCGTTCTCAAGGGATCATGCAAACTACTACTCCC
CAAGACCGGAGCTTTATCAGTGGGAGTCAGTACCACACTCCGCCCGAAAT
GCTCTGGGTATGATGTATAAACTA
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