FC920603

Overview
NameFC920603
Unique NameFC920603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920603_ssr562 microsatellite FC920603_ssr562:562..571. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9364 contig Ccv1_Contig9364:43..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.112e-101
Identity = 180/242 (74.38%), Postives = 206/242 (85.12%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRD----RRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATG+ LGSYLA+MTV+FFW M KTDFF+D FGVRS+R    EMM+ALYLQVSI+SQALIFVTRSRSWSFIERPGLLL TAF++AQLVATF+AVYANW FARI+G GWGWAGVIWLYS+V YFPLDI KF IR++LSG+AWD LLENK AFTTKKDYG+EEREAQW  AQRTLHGL  P+  + +L    + ++R+       ++RRAE+ARLRE
Sbjct:  683 NDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGSYLALMTVIFFWAMHKTDFFTDKFGVRSIRNSEHEMMSALYLQVSIVSQALIFVTRSRSWSFIERPGLLLVTAFMLAQLVATFLAVYANWGFARIKGIGWGWAGVIWLYSIVFYFPLDIFKFFIRFVLSGRAWDNLLENKIAFTTKKDYGREEREAQWATAQRTLHGLQPPEVASNTLFND-KSSYRELSEIAEQAKRRAEIARLRE 923          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.897e-101
Identity = 180/239 (75.31%), Postives = 201/239 (84.10%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQT-AFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATGV LG Y A+MTVVFFW M  TDFFSD FGV+SLR   +EMM+ALYLQVSIISQALIFVTRSRSWSF+ERPG+LL  AF+IAQLVAT IAVYANW+FAR++GCGWGWAGVIWLYS++ Y PLDI+KF IRYILSGKAW+ LL+NKTAFTTKKDYGKEEREAQW  AQRTLHGL  P+ T  F+     +        ++RRAE+ARLRE
Sbjct:  686 NDGTIMTISKDRVKPSPMPDSWKLKEIFATGVVLGGYQALMTVVFFWAMHDTDFFSDKFGVKSLRNSDEEMMSALYLQVSIISQALIFVTRSRSWSFLERPGMLLVIAFMIAQLVATLIAVYANWAFARVKGCGWGWAGVIWLYSIIFYLPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPEATNLFNEKNSYRELSEIAEQAKRRAEMARLRE 924          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 363.999 bits (933), Expect = 4.674e-100
Identity = 181/239 (75.73%), Postives = 200/239 (83.68%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLH-HPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDR+KPSPQPDSWKL++IF+TGV LG Y A+MTVVFFW+M+ +DFFS+ FGVR L  RP++MMAALYLQVSIISQALIFVTRSRSWS+ E PGLLL  AFVIAQLVATFIAVYANWSFARIEG GWGWAGVIWLYS +TY PLD+LKFGIRY+LSGKAW  LLENKTAFTTKKDYGKEEREAQW AAQRTLHGL    K   F+         +    ++RRAEV RLRE
Sbjct:  683 NDGTIMTISKDRMKPSPQPDSWKLRDIFSTGVVLGGYQALMTVVFFWVMKDSDFFSNYFGVRPLSQRPEQMMAALYLQVSIISQALIFVTRSRSWSYAECPGLLLLGAFVIAQLVATFIAVYANWSFARIEGAGWGWAGVIWLYSFLTYIPLDLLKFGIRYVLSGKAWLNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPAEKNNIFNEKNSYSELSQIAEQAKRRAEVVRLRE 921          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 9.745e-98
Identity = 178/242 (73.55%), Postives = 196/242 (80.99%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRD----RRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATGV LG Y AIMTV+FFW   KTDFFSD FGVRS+R    E+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AF+IAQL+AT IAVYANW FA+I G GWGWAGVIWLYS+VTYFPLD+ KF IRYILSGKAW  L ENKTAFT KKDYGKEEREAQW  AQRTLHGL  PK+         +G++R+       ++RRAE+ARLRE
Sbjct:  683 NDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQWALAQRTLHGL-QPKEAVNIFPE--KGSYRELSEIAEQAKRRAEIARLRE 921          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 350.517 bits (898), Expect = 5.347e-96
Identity = 174/242 (71.90%), Postives = 199/242 (82.23%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRD----RRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATG+ LG Y AIM+V+FFW   KTDFFSD FGVRS+R   DE+M A+YLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYA+W+FA+++G GWGWAGVIW+YS+VTYFP DILKF IRYILSGKAW +L +N+TAFTTKKDYG  EREAQW  AQRTLHGL  PK+         +G++R+       ++RRAE+ARLRE
Sbjct:  683 NDGTIMTISKDRVKPSPTPDSWKLKEIFATGIVLGGYQAIMSVIFFWAAHKTDFFSDKFGVRSIRDNNDELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFVIAQLVATLIAVYADWTFAKVKGIGWGWAGVIWIYSIVTYFPQDILKFAIRYILSGKAWASLFDNRTAFTTKKDYGIGEREAQWAQAQRTLHGL-QPKEDVNIFPE--KGSYRELSEIAEQAKRRAEIARLRE 921          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.191e-95
Identity = 170/242 (70.25%), Postives = 202/242 (83.47%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRD----RRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIFATGV LG+YLA++TVVFFWL+ KTDFF++ FGV S+R    + M+ALYLQVSI+SQALIFVTRSRSWSF+ERPG LL TAF++AQLVAT IAVYANW FARI+G GWGWAGVIWL+S+V YFPLDI KF IR++LSG+AWD LL+NKTAFTTK++YGK EREAQW  AQRTLHGL  P+  + +L    + ++R+       ++RRAE+ARLRE
Sbjct:  683 NDGTIMTISKDRVKPSPLPDSWKLNEIFATGVVLGTYLALVTVVFFWLIHKTDFFTNKFGVESIRNTEFKEMSALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVTAFLLAQLVATLIAVYANWDFARIKGIGWGWAGVIWLFSIVFYFPLDIFKFFIRFVLSGRAWDNLLQNKTAFTTKENYGKGEREAQWATAQRTLHGLQAPEPASHTLFND-KSSYRELSEIAEQAKRRAEIARLRE 923          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.527e-95
Identity = 169/238 (71.01%), Postives = 195/238 (81.93%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATGV LG+Y+A++TVVFFWL   T FFSD FGVRSL+ + +E++A LYLQVSIISQALIFVTRSRSWSF+ERPGLLL  AF +AQL+AT IA YA+W FARI+GCGWGW GVIW+YS+VTY PLDILKF  RY LSGKAW+ ++EN+TAFTTKKDYG+ EREAQW  AQRTLHGL  P ++ F  T            +++RAEVARLRE
Sbjct:  685 NDGTIMTISKDRVKPSPIPDSWKLKEIFATGVVLGTYMALVTVVFFWLAHDTTFFSDKFGVRSLQGKDEELIAVLYLQVSIISQALIFVTRSRSWSFVERPGLLLLIAFFVAQLIATLIATYAHWEFARIKGCGWGWCGVIWIYSIVTYIPLDILKFITRYTLSGKAWNNMIENRTAFTTKKDYGRGEREAQWALAQRTLHGL-KPPESMFEDTATYTELSEIAEQAKKRAEVARLRE 921          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 7.722e-95
Identity = 172/238 (72.27%), Postives = 194/238 (81.51%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKL EIFATGV LG+Y+A+ TV+FFWL   TDFFS  FGVRS++   +E+MAALYLQVSIISQALIFVTRSRSWSF+ERPG LL  AFVIAQLVAT IAVYANW FARI GCGWGWAG IW+YS++TY PLDILKF IRY L+GKAWD ++  KTAFTTKKDYGK EREAQW  AQRTLHGL  P +  F+  +       ++  ++RRAEVARLRE
Sbjct:  686 NDGTIMTISKDRVKPSPVPDSWKLNEIFATGVVLGTYMALTTVLFFWLAHDTDFFSKTFGVRSIQGNEEELMAALYLQVSIISQALIFVTRSRSWSFVERPGFLLLIAFVIAQLVATLIAVYANWGFARIVGCGWGWAGGIWVYSIITYIPLDILKFIIRYALTGKAWDNMINQKTAFTTKKDYGKGEREAQWALAQRTLHGL-PPPEAMFNDNKNELSEIAEQ--AKRRAEVARLRE 920          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 1.456e-93
Identity = 172/240 (71.67%), Postives = 194/240 (80.83%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTA--FSLTRQLQGAFRDRRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATGV LG+YLA+MTVVFFW    TDFFS  FGVRS+   P E+ AA+YLQVSI+SQALIFVTRSRSWS++ERPG  L +AF +AQL+AT IAVYANW+FARI G GWGWAGVIWLYS+V Y PLDILKF IRY LSG+AWD ++ENKTAFT+KKDYGK EREAQW  AQRTLHGL  P QT+  F+     +        ++RRAEVARLRE
Sbjct:  688 NDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGTYLAVMTVVFFWAAESTDFFSAKFGVRSISGNPHELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGFWLISAFFMAQLIATLIAVYANWNFARIRGIGWGWAGVIWLYSIVFYIPLDILKFIIRYSLSGRAWDNVIENKTAFTSKKDYGKGEREAQWAQAQRTLHGL-QPAQTSDMFNDKSTYRELSEIADQAKRRAEVARLRE 926          
BLAST of FC920603 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.154e-90
Identity = 168/242 (69.42%), Postives = 192/242 (79.34%), Query Frame = 2
Query:    2 NDGTIMTISKDRVKPSPQPDSWKLKEIFATGVALGSYLAIMTVVFFWLMRKTDFFSDAFGVRSLRTRPDEMMAALYLQVSIISQALIFVTRSRSWSFIERPGLLLATAFVIAQLVATFIAVYANWSFARIEGCGWGWAGVIWLYSLVTYFPLDILKFGIRYILSGKAWDTLLENKTAFTTKKDYGKEEREAQWVAAQRTLHGLHHPKQTAFSLTRQLQGAFRD----RRASQRRAEVARLRE 715
            NDGTIMTISKDRVKPSP PDSWKLKEIFATGV LG Y+AIMTVVFFW   KTDFF   F VR LR    EMM+ALYLQVSI+SQALIFVTRSRSWSF ERPG  L  AF +AQL+AT IAVY NW FARI+G GWGWAGVIWLYS+V YFPLDI+KF IRYIL+G AW  +++N+TAFTTK++YG EEREAQW  AQRTLHGL +  +TA  +    +G +R+       ++RRAE+ARLRE
Sbjct:  684 NDGTIMTISKDRVKPSPTPDSWKLKEIFATGVVLGGYMAIMTVVFFWAAYKTDFFPRTFHVRDLRGSEHEMMSALYLQVSIVSQALIFVTRSRSWSFTERPGYFLLIAFWVAQLIATAIAVYGNWEFARIKGIGWGWAGVIWLYSIVFYFPLDIMKFAIRYILAGTAWKNIIDNRTAFTTKQNYGIEEREAQWAHAQRTLHGLQN-TETANVVPE--RGGYRELSEIANQAKRRAEIARLRE 922          
The following BLAST results are available for this feature:
BLAST of FC920603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PMA1_ORYSJ1.112e-10174.38Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]
PMA4_NICPL1.897e-10175.31Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
PMA5_ARATH4.674e-10075.73ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
PMA2_ARATH9.745e-9873.55ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_ARATH5.347e-9671.90ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT1.191e-9570.25Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA6_ARATH4.527e-9571.01ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]
PMA8_ARATH7.722e-9572.27ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA9_ARATH1.456e-9371.67ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA3_ARATH1.154e-9069.42ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC32010F03EF RVDevelop1 Citrus clementina cDNA clone C32010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920603 ID=FC920603; Name=FC920603; organism=Citrus clementina; type=EST; length=732bp
AAATGACGGAACAATCATGACAATTTCAAAGGATCGTGTTAAGCCGTCCC
CTCAACCAGACAGCTGGAAACTAAAAGAGATTTTTGCCACTGGCGTTGCG
CTTGGAAGTTACTTGGCCATCATGACTGTTGTATTCTTCTGGTTAATGAG
GAAGACTGACTTTTTCTCGGACGCGTTTGGTGTAAGATCATTAAGAACTA
GACCCGATGAGATGATGGCCGCTTTATACTTGCAAGTCAGTATTATTAGC
CAGGCCCTTATTTTTGTCACGAGGTCCCGCAGCTGGTCCTTTATTGAACG
CCCTGGACTTCTCTTAGCCACGGCATTTGTGATTGCTCAGCTTGTAGCAA
CTTTCATAGCGGTCTATGCAAATTGGAGTTTTGCACGGATAGAGGGTTGT
GGCTGGGGCTGGGCCGGGGTAATCTGGCTTTACAGTCTGGTAACATATTT
TCCTCTTGACATACTCAAGTTCGGAATCCGCTACATCCTCAGTGGAAAGG
CTTGGGATACTCTTCTGGAGAACAAGACTGCCTTCACTACCAAGAAAGAC
TACGGTAAAGAAGAGAGAGAGGCACAATGGGTAGCCGCACAAAGAACCTT
GCACGGTCTTCACCACCCGAAACAAACGGCATTTTCTCTGACAAGACAGT
TACAGGGAGCTTTCAGAGATCGCCGAGCAAGCCAGAGACGTGCTGAGGTG
GCCAGGCTGAGGGAGTGCACACGCTGAAAGGG
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