FC920620

Overview
NameFC920620
Unique NameFC920620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10348 contig Ccv1_Contig10348:116..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 8.808e-87
Identity = 154/191 (80.63%), Postives = 173/191 (90.58%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGD 590
            EA +ICIDNSEWMRNGDY+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE   +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+FTGD
Sbjct:    4 EATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFTGD 194          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.241e-56
Identity = 106/186 (56.99%), Postives = 141/186 (75.81%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPI 578
            EA ++C+DNSEWMRNGD+ PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK   VLVT T +L KIL+    L+I G+++ +  +Q+AQLAL+HRQN  Q  RII FVGSP+K  K+ L  + ++LKKN VA+DI+NFGE  E N++KLEA +  VNNND SHL+ VPPGP+ LSD++L +PI
Sbjct:    4 EATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPI 188          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.053e-47
Identity = 96/192 (50.00%), Postives = 136/192 (70.83%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGD 590
            E+ ++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S+PI  G+
Sbjct:    4 ESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGE 192          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.053e-47
Identity = 96/192 (50.00%), Postives = 136/192 (70.83%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGD 590
            E+ ++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S+PI  G+
Sbjct:    4 ESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGE 192          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.053e-47
Identity = 96/192 (50.00%), Postives = 136/192 (70.83%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGD 590
            E+ ++C+DNSE+MRNGD+ P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S+PI  G+
Sbjct:    4 ESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGE 192          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.681e-45
Identity = 92/189 (48.68%), Postives = 125/189 (66.14%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTG 587
            EA +I IDNSEWM NGDY P+RF+AQ +  ++I   K   NPEN  G+MT+     +VL T T D GK L+ MH L + G      GIQ+AQLALKHR+NK Q+QRI+ FVGSPI  ++K L  + +++KKN+VA+DI++ GE    N   L+  + A N++DS HLV +PP P  LSD++  +PI  G
Sbjct:    4 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPIGQG 190          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 8.341e-45
Identity = 95/188 (50.53%), Postives = 132/188 (70.21%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPI 578
            EA ++ IDNSE+ RNGD+  +RF+AQ ++   I  AK   NPENTVG+++ AG   RVL T T++ GKILA +H  +I G+L++A  +Q+AQL LKHRQNK Q QRI+ FV SPI   +  L  + + LKKN+VA+DI+NFGE ++ NTE L+  +AAVNN   ++SHL+ V PGP  L + + S+PI
Sbjct:    4 EATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPI 190          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 4.577e-43
Identity = 96/192 (50.00%), Postives = 126/192 (65.62%), Query Frame = 3
Query:   21 EAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGD 590
            E+ +IC DNS++ RNGDY P+R   Q +  NL+C  K + NPEN VG+MT++   V VL T TSD G+I + MH ++  GE+NL  GI++A L LKHRQ K  + RI+VFVGSPI HE+  L    ++LKK  V +DIV+FG D   N E L A + A+N  D   SHLV VP G + LSD LLS+PI  G+
Sbjct:    4 ESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPIIQGE 192          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.511e-41
Identity = 90/186 (48.39%), Postives = 124/186 (66.67%), Query Frame = 3
Query:   39 IDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGD 590
            +DNSE+M NGD+ P+R QAQ +A N +C +KT+ NPEN VG++T+      VL T T D G+IL+ +H ++  G++    GI VA LALKHRQ    + RII FVG+P++  +K L  + + LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S PI  G+
Sbjct:  495 VDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPILAGE 677          
BLAST of FC920620 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.185e-40
Identity = 85/194 (43.81%), Postives = 128/194 (65.98%), Query Frame = 3
Query:   15 SCEAPLICIDNSEWMRNGDYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGD 590
            S EA +I +DNS++MRNGD+ P+R QAQ +A  LIC +K Q NPENT+G++++A     VL T T+D+ KI   +H +E  G +   + I++A LAL+HRQ + Q+ RI+ F+GSPI  ++K L  + ++LKK  V +DI+NFGE +E N +KL   +  +N  D   SHL+ V PG   L D L+++P+  G+
Sbjct:    2 SQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVVAGE 191          
The following BLAST results are available for this feature:
BLAST of FC920620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH8.808e-8780.6326S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI1.241e-5656.9926S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE1.053e-4750.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN1.053e-4750.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN1.053e-4750.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_SCHPO1.681e-4548.6826S proteasome regulatory subunit rpn10 OS=Schizos... [more]
RPN10_YEAST8.341e-4550.5326S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
PSMD4_DROME4.577e-4350.0026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN2.511e-4148.39Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_SCHMA6.185e-4043.8126S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC32010H02EF RVDevelop1 Citrus clementina cDNA clone C32010H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920620 ID=FC920620; Name=FC920620; organism=Citrus clementina; type=EST; length=591bp
AGGCATTATAAGAGAGCTGTGAGGCACCGTTGATCTGTATTGATAATTCT
GAGTGGATGCGTAACGGCGATTACGCTCCTAGTAGATTCCAAGCTCAAAC
TGAAGCTGCTAATCTTATTTGCGGAGCCAAAACTCAGTTAAATCCTGAGA
ATACCGTAGGTGTTATGACAATGGCAGGGAAAGGGGTTCGTGTTTTGGTC
ACTCCTACTAGTGATCTTGGCAAGATCTTGGCTTGCATGCACGGTTTAGA
AATAGGCGGTGAGTTGAATCTTGCTGCTGGGATCCAGGTGGCTCAATTGG
CTCTAAAGCATCGCCAGAACAAAAAGCAGCAACAAAGGATTATTGTCTTC
GTTGGAAGTCCCATCAAGCATGAAAAGAAAGTGCTGGAGATGATTGGCAG
GAAGTTGAAAAAGAATAGTGTAGCACTTGACATTGTCAACTTTGGTGAAG
ACGATGAGGGGAATACGGAGAAGCTTGAAGCACTTCTTGCTGCTGTGAAC
AACAATGATAGTAGCCACCTTGTTCACGTTCCTCCTGGTCCAAATGCCCT
TTCTGATGTGCTTCTTAGTACGCCTATCTTCACTGGGGATG
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