FC920621

Overview
NameFC920621
Unique NameFC920621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF3_ARATH (6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.045e-56
Identity = 102/117 (87.18%), Postives = 108/117 (92.31%), Query Frame = 2
Query:  326 PQYVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSIQ 676
            PQ +VVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIREIV SL YMYGVKR+LGIDGGYRGFYAKNT++L  K VNDIHKRGGT+LGTSRGGHDT KIVDSIQ
Sbjct:   61 PQKIVVHKDGPRGIHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVSSLSYMYGVKRILGIDGGYRGFYAKNTVSLDSKVVNDIHKRGGTILGTSRGGHDTTKIVDSIQ 177          
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF7_ARATH (6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 101/117 (86.32%), Postives = 107/117 (91.45%), Query Frame = 2
Query:  326 PQYVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSIQ 676
            P+ VVVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIRE+V SL YMYGVKR+LGIDGGYRGFYAKNTI L  K VNDIHKRGGT++GTSRGGHDT KIVDSIQ
Sbjct:   61 PEKVVVHKDGPRGVHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREVVSSLSYMYGVKRILGIDGGYRGFYAKNTIPLNSKVVNDIHKRGGTIIGTSRGGHDTNKIVDSIQ 177          
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF1_ARATH (6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 2
Query:  326 PQYVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSIQ 676
            PQ +VVH DSPRGTHFRRAGPRQ+VYFESD+V ACIVTCGGLCPGLNTVIREIV  L YMYGVKR+LGIDGGYRGFYA+NTI L  K VNDIH+ GGT+LGTSRGGH+T KIVDSIQ
Sbjct:   62 PQKIVVHPDSPRGTHFRRAGPRQRVYFESDDVLACIVTCGGLCPGLNTVIREIVCGLSYMYGVKRILGIDGGYRGFYARNTIHLDLKTVNDIHRSGGTILGTSRGGHNTTKIVDSIQ 178          
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF6_ARATH (6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.736e-50
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 2
Query:  335 VVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSIQ 676
            +VVHKDSPRGTHFRRAGPRQKVYF+  +V ACIVTCGGLCPGLNTVIREIV  L++MYGV  V+G+D G+RGFY+KNT+ALTPK V+DIHKRGGT+LGTSRGGHDT KIVD+IQ
Sbjct:   65 IVVHKDSPRGTHFRRAGPRQKVYFKPSDVRACIVTCGGLCPGLNTVIREIVCGLHFMYGVTEVIGVDCGFRGFYSKNTVALTPKTVSDIHKRGGTILGTSRGGHDTSKIVDNIQ 178          
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF4_ARATH (6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.521e-46
Identity = 89/116 (76.72%), Postives = 97/116 (83.62%), Query Frame = 2
Query:  329 QYVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSIQ 676
            Q +VV K S RG HFRRAGPR++VYF SDEV ACIVTCGGLCPG+NTVIREIV  L  MYGV  +LGI GGYRGFY+KNT+ LTPK VNDIHKRGGT L TSRGGHDT KIVD+IQ
Sbjct:  113 QNIVVQKGSKRGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGINTVIREIVCGLNNMYGVNNILGIQGGYRGFYSKNTMNLTPKVVNDIHKRGGTFLQTSRGGHDTAKIVDNIQ 228          
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF2_ARATH (6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 59/101 (58.42%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  371 FRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSI 673
            + RAGPR+++ +E   V A IVTCGGLCPG+NTVIRE+V  L+ +YGV+ + GI  GYRGFY+   + L PK V+D HK+GGTVL TSRGG    KIVD+I
Sbjct:   61 YHRAGPRREIMYEPSAVKAAIVTCGGLCPGMNTVIRELVVGLWELYGVREIYGIPAGYRGFYSMKAVKLDPKAVHDWHKKGGTVLATSRGGFHLQKIVDAI 161          
BLAST of FC920621 vs. ExPASy Swiss-Prot
Match: K6PF5_ARATH (6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 2
Query:  377 RAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN--TIALTPKGVNDIHKRGGTVLGTSRGGHDTLKIVDSIQ 676
            RAGPR+K+YF  +EV A I+TCGGLCPGLN VIR IV +L  +YGVK ++GI  GYRGF  K+   + L+ K V +IH  GG++LG SRGG    +IVDS++
Sbjct:  166 RAGPREKIYFRPEEVKAAIITCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFSDKDLTEMPLSRKVVQNIHLSGGSLLGVSRGGPSVSEIVDSME 266          
The following BLAST results are available for this feature:
BLAST of FC920621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
K6PF3_ARATH8.045e-5687.186-phosphofructokinase 3 OS=Arabidopsis thaliana GN... [more]
K6PF7_ARATH3.993e-5586.326-phosphofructokinase 7 OS=Arabidopsis thaliana GN... [more]
K6PF1_ARATH1.855e-5282.916-phosphofructokinase 1 OS=Arabidopsis thaliana GN... [more]
K6PF6_ARATH1.736e-5079.826-phosphofructokinase 6 OS=Arabidopsis thaliana GN... [more]
K6PF4_ARATH1.521e-4676.726-phosphofructokinase 4, chloroplastic OS=Arabidop... [more]
K6PF2_ARATH1.293e-2958.426-phosphofructokinase 2 OS=Arabidopsis thaliana GN... [more]
K6PF5_ARATH1.061e-2355.886-phosphofructokinase 5, chloroplastic OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC32010H03EF RVDevelop1 Citrus clementina cDNA clone C32010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920621 ID=FC920621; Name=FC920621; organism=Citrus clementina; type=EST; length=678bp
GAGGTTAACGACTTTTGTCTTAGTTAACTTTACTAACTACATTGCTTCAC
TATTGAGGAGTTGGAAGTGGTCTGCGTCTTCGTTATTTAATGTTACCATG
ATTCTTTGGTTTAGAGAGGCTGACCCGAGAATCTTTTAGCTGTTGATCTG
AAATATCCTACACCGCTAGTGAGTGAGTTCTAGGACTGGTTAATAAGTTG
AGGGCTCTCCTATCTAAGTAAATGCTTTTGGGTTGCAAAGCCAAAATAAC
GAAACTGTGATGGGCTGTGTGCCCAAAGCGAACAATATCAACTCGGTTGT
TGGCCCGGGCTGTTACATGATCTCTCCCCAGTATGTTGTTGTTCATAAGG
ATAGTCCAAGAGGGACTCACTTCCGAAGAGCTGGACCTCGTCAAAAGGTG
TATTTTGAGTCAGATGAAGTTTATGCTTGTATCGTGACATGTGGTGGCTT
ATGCCCTGGACTCAACACGGTGATTAGAGAGATAGTTTACAGTCTTTACT
ACATGTATGGAGTGAAGAGAGTGCTGGGAATTGATGGAGGATACAGGGGC
TTTTATGCTAAAAATACAATTGCTCTAACACCTAAGGGTGTGAATGACAT
CCATAAACGTGGTGGAACCGTCCTTGGTACTTCACGAGGTGGCCATGATA
CCCTCAAGATTGTTGACAGCATCCAAGA
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