FC920625

Overview
NameFC920625
Unique NameFC920625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10851 contig Ccv1_Contig10851:25..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC920625 vs. ExPASy Swiss-Prot
Match: PSMF1_ARATH (Probable proteasome inhibitor OS=Arabidopsis thaliana GN=At3g53970 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.702e-48
Identity = 101/195 (51.79%), Postives = 136/195 (69.74%), Query Frame = 2 
Query:   74 MPNEKSVMAVIRAARPTFRNDFDKIAFVVHASFLASGHVLTATGPAADTEFTSPSSSTDEVGIDHWNELADDNYAFLFINPEKGSKKVLVKCLVMNSKLLADALAEGASEPVHLEINVADYVAE-NGGNYSDKFKNLEKLVTDLDKDIISKLYGSPKTASSERCEGSRPIVTDPAFGFEHE---GPQSYVTGIPV 646
            M N ++VMA+IR ARP FRN+ DK+AF +H+SF+ASG++LTATG  A  +    SSS ++VGI+ WNE  +  YAF++ NP+KGSKK+LVKCL M+ KLL DA+A+G +EP HLEI V DY  E N G+YS +FKNL+KLVTDL  +II KL G PK  +S R + S     +P +  +     GPQ + +G+ V
Sbjct:    1 MANSQTVMAMIRLARPPFRNNHDKVAFAIHSSFVASGYILTATGRPAFADEALSSSSQNDVGIEGWNEF-EGEYAFVYANPKKGSKKILVKCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEGDYSAQFKNLDKLVTDLQSEIIDKLDGKPKPVAS-RAQSSSETNEEPRYYDDTPNPLGPQIHPSGVVV 193
The following BLAST results are available for this feature:
BLAST of FC920625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PSMF1_ARATH5.702e-4851.79Probable proteasome inhibitor OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC32010H07EF RVDevelop1 Citrus clementina cDNA clone C32010H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920625 ID=FC920625; Name=FC920625; organism=Citrus clementina; type=EST; length=647bp
GGCGGACATTCGAAACAAGACCTCGCTCTCTCATAAACTCTAAAAACAAA
GAAAGGAAAAAGATTAAAAAAAAATGCCGAACGAGAAATCAGTGATGGCC
GTGATAAGAGCGGCAAGACCTACCTTTAGAAACGACTTCGATAAAATTGC
ATTTGTCGTTCACGCCTCTTTCCTTGCCAGTGGACACGTGTTAACCGCCA
CTGGCCCTGCCGCGGACACCGAGTTCACCTCTCCCTCCTCCTCCACCGAT
GAAGTAGGAATTGATCACTGGAACGAACTAGCTGATGATAATTACGCGTT
TCTGTTTATAAACCCTGAGAAAGGTTCAAAGAAAGTGTTGGTGAAGTGTC
TCGTGATGAACAGTAAATTGCTGGCTGATGCATTAGCTGAGGGAGCTTCG
GAGCCTGTGCATCTCGAAATCAATGTTGCAGACTACGTTGCAGAAAATGG
AGGCAATTACTCTGATAAGTTCAAGAATTTAGAGAAGCTTGTGACAGATC
TTGATAAAGACATTATTTCAAAATTATACGGCTCCCCAAAAACAGCTAGC
TCGGAAAGATGTGAAGGATCAAGGCCTATTGTAACCGATCCTGCTTTTGG
ATTTGAGCATGAAGGGCCTCAATCTTATGTTACAGGAATTCCTGTTC
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