FC920628

Overview
NameFC920628
Unique NameFC920628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14109 contig Ccv1_Contig14109:1..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB1B_ARATH (ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.547e-48
Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARPKD 331
            A VRKAEIMLLDEATSALDAESERSVQEALD+ACSG+T+IVVAHRLSTIRNAHVIAVIDDGKVAE GSHSHLLKN+PDG YARMIQLQRFTH+QVIGMTSGSSS  +  D
Sbjct: 1176 ALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQRFTHTQVIGMTSGSSSRVKEDD 1285          

HSP 2 Score: 109.768 bits (273), Expect = 6.592e-24
Identity = 54/108 (50.00%), Postives = 76/108 (70.37%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQVIGMTSGSSSSARP 325
            A ++   I+LLDEATSALD+ESE+ VQEALDR   G+TT+++AHRLSTIR A ++AV+  G V+E+G+H  L     +G YA++I++Q   H     M++   SSARP
Sbjct:  520 AMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHE--TAMSNARKSSARP 625          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB2B_ARATH (ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.049e-25
Identity = 55/88 (62.50%), Postives = 73/88 (82.95%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V+   I+LLDEATSALDAESE+SVQEALDR   G+TT+VVAHRLST+RNA +IAV+ +GK+ E G+H +L+ +NPDG Y+ +++LQ
Sbjct:  513 AIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLI-SNPDGAYSSLLRLQ 599          

HSP 2 Score: 95.5153 bits (236), Expect = 1.287e-19
Identity = 50/89 (56.18%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++   I+LLDEATSALD ESER VQ+ALDR  + +TT+VVAHRLSTI+NA  I+V+  GK+ E GSH  L+ N   G Y ++I LQ+
Sbjct: 1142 AILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNK-SGPYFKLISLQQ 1229          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.959e-24
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR-------FTHSQVIGMTSGSSSSAR 322
            A ++   I+LLDEATSALDAESER VQEALDR    +TT+VVAHRLST+RNA +IAVI  GK+ E GSHS LL+ +P+G Y+++I+LQ         T  Q + M S   SS R
Sbjct:  555 AILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHSELLR-DPEGAYSQLIRLQEDTKQTEDSTDEQKLSMESMKRSSLR 667          

HSP 2 Score: 100.138 bits (248), Expect = 5.223e-21
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A V+  +++LLDEATSALDAESER VQ+ALDR    +TT+VVAHRLSTI+NA VIAV+ +G + E G H  L+ N  DG YA ++QL
Sbjct: 1201 AIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLI-NIKDGVYASLVQL 1286          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 5.048e-24
Identity = 54/88 (61.36%), Postives = 70/88 (79.55%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A V+   I+LLDEATSALDAESE+ VQEALDR   G+TT+VVAHRLST+RNA +IAV+  GK+ E GSH  L+ +NPDG Y+ ++++Q
Sbjct:  513 AIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELI-SNPDGAYSSLLRIQ 599          

HSP 2 Score: 101.679 bits (252), Expect = 1.795e-21
Identity = 52/89 (58.43%), Postives = 70/89 (78.65%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++  EI+LLDEATSALD ESER VQ+ALDR    +TT+VVAHRLSTI+N+ +I+VI DGK+ E GSH ++L  N +G Y+++I LQ+
Sbjct: 1134 AVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSH-NILVENKNGPYSKLISLQQ 1221          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB5B_ARATH (ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 8.610e-24
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFT-HSQVIGMTSGSSSS 316
            A ++   I+LLDEATSALDAESER VQEALDR    +TT++VAHRLST+RNA +IAVI  GK+ E GSHS LLK++ +G Y+++++LQ     S+ + ++ GS SS
Sbjct:  505 AILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDH-EGAYSQLLRLQEINKESKRLEISDGSISS 609          

HSP 2 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A V++ +I+LLDEATSALDAESER VQ+ALDR    +TTIVVAHRLSTI+NA VIAV+ +G +AE G+H  L+ N   G YA ++QL
Sbjct: 1139 AIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLI-NIEGGVYASLVQL 1224          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB4B_ARATH (ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.124e-23
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQ 265
            A ++   I+LLDEATSALDAESER VQEALDR    +TT+VVAHRLST+RNA +IAVI  GK+ E GSH+ LLK +P+G Y+++I+LQ
Sbjct:  536 AILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLK-DPEGAYSQLIRLQ 622          

HSP 2 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A V+  +++LLDEATSALDAESER VQ+ALDR    +TTIVVAHRLSTI+NA VIAV+ +G + E G H  L+ N  DG YA ++QL
Sbjct: 1195 AIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLI-NIKDGVYASLVQL 1280          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB3B_ARATH (ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.124e-23
Identity = 56/89 (62.92%), Postives = 72/89 (80.90%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++   I+LLDEATSALDAESER VQEALDR    +TT++VAHRLST+RNA +IAVI  GK+ E GSHS LLK++ +G YA++I+LQ+
Sbjct:  500 AILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLSTVRNADMIAVIHRGKIVEEGSHSELLKDH-EGAYAQLIRLQK 587          

HSP 2 Score: 98.9821 bits (245), Expect = 1.164e-20
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A V++ +I+LLDEATSALDAESER VQ+ALDR    +TT+VVAHRLSTI+NA VIAV+ +G + E G+H  L+ N   G YA ++QL
Sbjct: 1138 AIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGTHETLI-NIEGGVYASLVQL 1223          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB11B_ARATH (ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.918e-23
Identity = 59/104 (56.73%), Postives = 78/104 (75.00%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHS-QVIGMTSGSS 310
            A ++   I+LLDEATSALDAESER VQEALDR    +TT++VAHRLST+RNA +IAVI  GK+ E GSHS LLK++ +G Y+++I+LQ      +   ++SGSS
Sbjct:  533 AILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDS-EGAYSQLIRLQEINKDVKTSELSSGSS 635          

HSP 2 Score: 100.908 bits (250), Expect = 3.062e-21
Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQL 262
            A V++ +I+LLDEATSALDAESER VQ+ALDR    +TTIVVAHRLSTI+NA VIAV+ +G +AE G+H  L+K    G YA ++QL
Sbjct: 1187 AIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKGTHETLIKIE-GGVYASLVQL 1272          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: MDR_ORYSJ (Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.289e-23
Identity = 58/107 (54.21%), Postives = 78/107 (72.90%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHS---QVIGMTSGSSS 313
            A ++  +I+LLDEATSALD ESER VQEALD A  G+TTIV+AHRLSTIRNA +IAV+  G+V ELG H  L+ N+ +G Y+ +++LQ+   S     IG+T  +S+
Sbjct:  511 AILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLSTIRNADIIAVMQSGEVKELGPHDELIAND-NGLYSSLVRLQQTRDSNEIDEIGVTGSTSA 616          

HSP 2 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 47/95 (49.47%), Postives = 67/95 (70.53%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQV 286
            A ++   I+LLDEATSALD++SE+ VQEALDR   G+T++VVAHRLSTI+N  +I V++ G V E G+H+ L+     G Y  ++ LQ+  + QV
Sbjct: 1149 AILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTVVEKGTHASLMAKGLSGTYFSLVNLQQGGNQQV 1243          
BLAST of FC920628 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.121e-22
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQRFTHSQ 283
            A ++  +I+LLDEATSALD+ESER VQE+LD A  G+TTIV+AHRLSTIRNA VI VI +G++ E GSH  LLK   DG Y  ++ LQ+  + +
Sbjct:  511 AIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTIRNADVICVIHNGQIVETGSHEELLK-RIDGQYTSLVSLQQMENEE 603          

HSP 2 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 45/89 (50.56%), Postives = 65/89 (73.03%), Query Frame = 2
Query:    2 AFVRKAEIMLLDEATSALDAESERSVQEALDRACSGKTTIVVAHRLSTIRNAHVIAVIDDGKVAELGSHSHLLKNNPDGCYARMIQLQR 268
            A ++   ++LLDEATSALD++SER VQ+AL+R   G+T+I++AHRLSTI+N  +I V+  GK+ E G+HS LL+  P G Y  +  +QR
Sbjct: 1149 AVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQNCDMIVVLGKGKIVESGTHSSLLEKGPTGTYFSLAGIQR 1237          
The following BLAST results are available for this feature:
BLAST of FC920628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
AB1B_ARATH6.547e-4888.18ABC transporter B family member 1 OS=Arabidopsis t... [more]
AB2B_ARATH2.049e-2562.50ABC transporter B family member 2 OS=Arabidopsis t... [more]
AB21B_ARATH2.959e-2455.26ABC transporter B family member 21 OS=Arabidopsis ... [more]
AB10B_ARATH5.048e-2461.36ABC transporter B family member 10 OS=Arabidopsis ... [more]
AB5B_ARATH8.610e-2455.66ABC transporter B family member 5 OS=Arabidopsis t... [more]
AB4B_ARATH1.124e-2363.64ABC transporter B family member 4 OS=Arabidopsis t... [more]
AB3B_ARATH1.124e-2362.92ABC transporter B family member 3 OS=Arabidopsis t... [more]
AB11B_ARATH1.918e-2356.73ABC transporter B family member 11 OS=Arabidopsis ... [more]
MDR_ORYSJ7.289e-2354.21Putative multidrug resistance protein OS=Oryza sat... [more]
AB17B_ARATH2.121e-2257.45ABC transporter B family member 17 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32011A01EF RVDevelop1 Citrus clementina cDNA clone C32011A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920628 ID=FC920628; Name=FC920628; organism=Citrus clementina; type=EST; length=480bp
GGCTTTTGTGAGGAAAGCAGAGATTATGCTGCTTGATGAGGCAACAAGTG
CACTTGATGCCGAGTCTGAGAGATCCGTTCAGGAGGCTCTAGACCGCGCT
TGCTCAGGAAAAACAACAATTGTTGTTGCTCATCGACTATCAACCATCAG
GAATGCCCATGTCATTGCAGTAATCGATGATGGGAAAGTCGCGGAACTAG
GATCTCATTCACACCTGCTGAAAAATAATCCTGATGGATGTTACGCCCGG
ATGATTCAGTTACAAAGGTTCACACATAGCCAGGTTATCGGAATGACATC
AGGTTCAAGTTCCTCAGCCAGACCAAAAGATGACGAGGAAAGAGAAGCCT
AGTAAGTTTAAAGATTAAACCAAGTTAAAAAGTGGAGTATTTTCTATATA
CCCCTTGATGATTTTTTTGAGTTTTGATTGTCAGTTTAATGTTTTGGTAT
ATAATATGTGTATTACCTAATTGTTCAAAA
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