FC920631

Overview
NameFC920631
Unique NameFC920631
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_TREDE (Seryl-tRNA synthetase OS=Treponema denticola GN=serS PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.433e-66
Identity = 125/241 (51.87%), Postives = 158/241 (65.56%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGL--GRYGEIS 714
            PVG ED   +  K  G    F+F  KDH QLG+ LD+ DF+A  +VSG KFY+LKNEAV LE  L  + L+ + K GF P  TP+I +  ++   GF PRG  + VYS+EG   CL+ TAEI +GG H D I+ +  LPLKY   SHCF             LYRVHQFSKLEMFV+C PEESD+ HEEL  IEE++++ LG+ F+ VD  T DLGAPAYRK+D+EAWMPG   G +GE++
Sbjct:  111 PVGKEDSDNLEVKRCGTVPKFDFEPKDHVQLGQDLDLIDFEAGTKVSGVKFYFLKNEAVFLEQALTMYGLNILRKHGFKPFITPDIAKEEILYGIGFNPRGEESNVYSLEGEGTCLVATAEITLGGYHSDEIIKKESLPLKYCGLSHCFRREAGAAGQFSKGLYRVHQFSKLEMFVYCTPEESDALHEELRLIEEEIFNGLGIPFRVVDTCTGDLGAPAYRKWDLEAWMPGRNGGEWGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BORDL (Seryl-tRNA synthetase OS=Borrelia duttonii (strain Ly) GN=serS PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.750e-62
Identity = 114/242 (47.11%), Postives = 163/242 (67.36%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGR---YGEIS 714
            PVG  ED +++ K  GN   F+F  KDH ++G  LD+FDF+ A EVSG+KFYYLKNEAV LE+ +IN+  S++  +GF    TP++ R  +V+  GF PRGA + +Y IE  D+ L+GTAEI +GG + ++IL +   PLK A  SHCF             LYRVHQFSK+EMF FC+ E+SD  H E + +EE++++ L + ++ +++ + DLGAPAY+K+D+EAWMPG G    YGE++
Sbjct:  111 PVGVSEDENVVLKVSGNIPKFDFKPKDHLEIGIHLDLFDFEKAREVSGNKFYYLKNEAVFLELAMINFAFSKLKAKGFDLFITPDVAREFIVDGIGFNPRGAESNIYKIEDTDKYLVGTAEITLGGYYYNTIL-DLKSPLKMAGLSHCFRKEAGAAGQFSKGLYRVHQFSKVEMFCFCRSEDSDRIHNEFLELEEEIFTELEIPYRVLNVCSSDLGAPAYKKYDIEAWMPGRGENGDYGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BORRA (Seryl-tRNA synthetase OS=Borrelia recurrentis (strain A1) GN=serS PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.949e-61
Identity = 114/242 (47.11%), Postives = 162/242 (66.94%), Query Frame = 1
Query:    1 PVG-GEDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGR---YGEIS 714
            PVG  ED +++ K  GN   F+F  KDH ++G  LD+FDF+ A EVSG+KFYYLKNEAV LE+ +IN+  S++  +GF    TP++ R  +V+  GF PRGA + +Y IE  D+ L+GTAEI +GG + ++IL +   PLK A  SHCF             LYRVHQFSK+EMF FC+ E+SD  H E + +EE+++  L + ++ +++ + DLGAPAY+K+D+EAWMPG G    YGE++
Sbjct:  111 PVGVSEDENVVLKVSGNIPKFDFKPKDHLEIGIHLDLFDFEKAREVSGNKFYYLKNEAVFLELAMINFAFSKLKAKGFDLFITPDVAREFIVDGIGFNPRGAESNIYKIEDTDKYLVGTAEITLGGYYYNTIL-DLKSPLKMAGLSHCFRKEAGAAGQFSKGLYRVHQFSKVEMFCFCRSEDSDRIHNEFLELEEEIFIELEIPYRVLNVCSSDLGAPAYKKYDIEAWMPGRGENGDYGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BORGA (Seryl-tRNA synthetase OS=Borrelia garinii GN=serS PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.271e-60
Identity = 112/242 (46.28%), Postives = 163/242 (67.36%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMP---GLGRYGEIS 714
            P+G  E+ +   K VG    F+F  KDH +LG+ LD+ DFD A EVSGSKFYYLKNEAV LE+ LIN++L+++ ++GF    TP++ R  +V+  GF PRG  + +Y IE  D+ L+GT+EI +GG + + I+ +  LP+K A FSHCF             LYRVHQFSK+EMF FC+ EES   H+E + I+E +++ L + ++ +++ + DLG+PAY+K+D+EAWMP   G G YGE++
Sbjct:  111 PIGNSEEDNFEIKKVGVVPKFDFKPKDHLELGRDLDLLDFDRAREVSGSKFYYLKNEAVFLEIALINFSLNKLREKGFDVFITPDVAREFIVDGIGFNPRGDESNIYKIESTDKYLVGTSEITLGGYYYNKII-DLTLPIKMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESQVIHDEFLSIQEQIFTELEIPYRVLNICSFDLGSPAYKKYDIEAWMPGRDGKGSYGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_RUBXD (Seryl-tRNA synthetase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=serS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.070e-59
Identity = 112/239 (46.86%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 PVGGEDCSIIR-KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            PVG +D   +  +  G    F F  KDH +LG+AL I DFDA A+ +GSKFY+L+ EAV+LE+GL+ + L  +  RG+    TP++ R  ++   GF PRG  TQ+YS+E  D  LI TAEI + G  +D I++E  LP ++A  SHCF             LYRVHQF+K+EMF F  PE+S   HEE++ IEE+++ +L + ++ VD+ T DLGA AYRK+DVEAWMPG G YGE++
Sbjct:  111 PVGRDDSENVEIRRWGEAPEFGFEPKDHVELGEALGIIDFDAGAKTTGSKFYFLRGEAVLLELGLVRFALDLLAGRGYELAMTPDLARDRMLLGTGFVPRGPETQIYSVENTDLSLIATAEITLAGQLVDEIVAEESLPRRFAGLSHCFRTEAGAHGRASRGLYRVHQFTKVEMFAFTTPEQSGEMHEEMLSIEEEIFRTLEIPYRVVDICTGDLGAAAYRKYDVEAWMPGRGDYGEVT 349          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BORAP (Seryl-tRNA synthetase OS=Borrelia afzelii (strain PKo) GN=serS PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.070e-59
Identity = 113/242 (46.69%), Postives = 163/242 (67.36%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMP---GLGRYGEIS 714
            P+G  E+ +   K VG    F+F  KDH +LG+ LD+ DFD A EVSGSKFYYLKNEAV LE+ LIN++L+++ ++GF    TP++ R  +V+  GF PRG  + +Y IE  D+ L+GT+EI +GG + + I+ +  LP+K A FSHCF             LYRVHQFSK+EMF FC+ EES   H+E + I+E +++ L + ++ +++ + DLG+PAY+K+D+EAWMP   G G YGEI+
Sbjct:  111 PIGNSEEDNFEIKKVGIIPRFDFKPKDHLELGRDLDLLDFDRAREVSGSKFYYLKNEAVFLEIALINFSLNKLREKGFNVFITPDVAREFIVDGIGFNPRGNESNIYKIEDTDKYLVGTSEITLGGYYYNKII-DLTLPIKMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESSIIHDEFLSIQEQIFTELEIPYRVLNICSFDLGSPAYKKYDIEAWMPGRDGKGGYGEIT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DICT6 (Seryl-tRNA synthetase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=serS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.933e-59
Identity = 106/227 (46.70%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  GN   F F  KDH  L    D+ DF+  ++V+GS FYYLKNEAV+LE  L    +  ++  GF    TP++ R  +++  GFQPRG   Q+Y +E  D  LI TAEI +GG H D IL E  LPLKY  FSHCF             LYRVHQFSK E+F+ C+PE+S+  HE ++ +EE ++  L + ++ VD+ + DLGAPA RKFD+EAWMPG G +GE++
Sbjct:  125 KRWGNIKTFTFTPKDHLDLALLNDLVDFERGSKVTGSNFYYLKNEAVLLEFALFRLVIDTLLPEGFKLFITPDLARMEIIDGIGFQPRGPEAQIYRVEDTDLGLIATAEITLGGYHKDEILDELDLPLKYLGFSHCFRTEAGAYGRYNRGLYRVHQFSKAEIFIICRPEDSEEMHEYILSLEEKIFQKLEIPYRVVDICSGDLGAPAARKFDIEAWMPGRGDFGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BORBZ (Seryl-tRNA synthetase OS=Borrelia burgdorferi (strain ZS7) GN=serS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.933e-59
Identity = 110/242 (45.45%), Postives = 162/242 (66.94%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMP---GLGRYGEIS 714
            P+G  E+ +   K VG    F+F  KDH +LG+ LD+ DFD A E+SGSKFYYLKNEAV LE+ LIN++L+++  +GF    TP++ R  +V+  GF PRG  + +Y IE  D+ L+GT+EI +GG + + I+ +  LP++ A FSHCF             LYRVHQFSK+EMF FC+ EES   H+E + I+E +++ L + ++ +++ + DLG+PAY+K+D+EAWMP   G G YGE++
Sbjct:  111 PIGSSEEDNFEIKRVGVVPQFDFKPKDHLELGRDLDLLDFDRAREISGSKFYYLKNEAVFLEIALINFSLNKLRDKGFDVFITPDVAREFIVDGIGFNPRGNESNIYKIEDTDKYLVGTSEITLGGYYYNKII-DLTLPIRMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESGVIHDEFLSIQEQIFTELEIPYRVLNICSFDLGSPAYKKYDIEAWMPGRDGKGGYGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_BORBU (Seryl-tRNA synthetase OS=Borrelia burgdorferi GN=serS PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.933e-59
Identity = 110/242 (45.45%), Postives = 162/242 (66.94%), Query Frame = 1
Query:    1 PVGG-EDCSIIRKTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMP---GLGRYGEIS 714
            P+G  E+ +   K VG    F+F  KDH +LG+ LD+ DFD A E+SGSKFYYLKNEAV LE+ LIN++L+++  +GF    TP++ R  +V+  GF PRG  + +Y IE  D+ L+GT+EI +GG + + I+ +  LP++ A FSHCF             LYRVHQFSK+EMF FC+ EES   H+E + I+E +++ L + ++ +++ + DLG+PAY+K+D+EAWMP   G G YGE++
Sbjct:  111 PIGSSEEDNFEIKRVGVVPQFDFKPKDHLELGRDLDLLDFDRAREISGSKFYYLKNEAVFLEIALINFSLNKLRDKGFDVFITPDVAREFIVDGIGFNPRGNESNIYKIEDTDKYLVGTSEITLGGYYYNKII-DLTLPIRMAGFSHCFRKEAGAYGQLSKGLYRVHQFSKVEMFCFCKAEESGVIHDEFLSIQEQIFTELEIPYRVLNICSFDLGSPAYKKYDIEAWMPGRDGKGGYGEVT 351          
BLAST of FC920631 vs. ExPASy Swiss-Prot
Match: SYS_DICTD (Seryl-tRNA synthetase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=serS PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.183e-58
Identity = 105/227 (46.26%), Postives = 142/227 (62.56%), Query Frame = 1
Query:   34 KTVGNPSVFNFPVKDHFQLGKALDIFDFDAAAEVSGSKFYYLKNEAVMLEMGLINWTLSEVIKRGFTPLTTPEIVRSSVVEKCGFQPRGANTQVYSIEGADQCLIGTAEIPVGGIHMDSILSESLLPLKYAAFSHCFXXXXXXXXXXXXXLYRVHQFSKLEMFVFCQPEESDSYHEELIRIEEDLYSSLGLHFKTVDMATEDLGAPAYRKFDVEAWMPGLGRYGEIS 714
            K  G    FNF  KDH  L    D+ DF+  ++V+GS FYYLKNEAV+LE  L    +  ++  GF    TP++ R  +++  GFQPRG   Q+Y +E  D  LI TAEI +GG H D IL E  LPLKY  FSHCF             LYRVHQFSK E+F+ C+PE+S+  HE ++ +EE ++  L + ++ +D+ + DLGAPA RKFD+EAWMPG G +GE++
Sbjct:  125 KKWGEIKTFNFTPKDHLDLALLNDLVDFERGSKVTGSNFYYLKNEAVLLEFALFRLVIDTLLPEGFKLFITPDLARMEIIDGIGFQPRGPEAQIYRVEDTDLGLIATAEITLGGYHKDEILDELDLPLKYLGFSHCFRTEAGAYGRYNRGLYRVHQFSKAEIFIICRPEDSEEMHEYILGLEEKIFQKLEIPYRVLDICSGDLGAPAARKFDIEAWMPGRGEFGEVT 351          
The following BLAST results are available for this feature:
BLAST of FC920631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYS_TREDE3.433e-6651.87Seryl-tRNA synthetase OS=Treponema denticola GN=se... [more]
SYS_BORDL8.750e-6247.11Seryl-tRNA synthetase OS=Borrelia duttonii (strain... [more]
SYS_BORRA1.949e-6147.11Seryl-tRNA synthetase OS=Borrelia recurrentis (str... [more]
SYS_BORGA6.271e-6046.28Seryl-tRNA synthetase OS=Borrelia garinii GN=serS ... [more]
SYS_RUBXD1.070e-5946.86Seryl-tRNA synthetase OS=Rubrobacter xylanophilus ... [more]
SYS_BORAP1.070e-5946.69Seryl-tRNA synthetase OS=Borrelia afzelii (strain ... [more]
SYS_DICT66.933e-5946.70Seryl-tRNA synthetase OS=Dictyoglomus thermophilum... [more]
SYS_BORBZ6.933e-5945.45Seryl-tRNA synthetase OS=Borrelia burgdorferi (str... [more]
SYS_BORBU6.933e-5945.45Seryl-tRNA synthetase OS=Borrelia burgdorferi GN=s... [more]
SYS_DICTD1.183e-5846.26Seryl-tRNA synthetase OS=Dictyoglomus turgidum (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32011A06EF RVDevelop1 Citrus clementina cDNA clone C32011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920631 ID=FC920631; Name=FC920631; organism=Citrus clementina; type=EST; length=736bp
CCCGTAGGAGGGGAGGATTGTTCTATAATTAGAAAAACGGTTGGTAACCC
CAGTGTGTTTAACTTCCCTGTCAAGGATCACTTTCAGCTTGGGAAAGCAC
TCGATATCTTTGATTTTGATGCAGCTGCAGAGGTCAGTGGTTCAAAATTC
TATTACCTGAAGAATGAAGCTGTTATGCTAGAGATGGGTCTTATCAACTG
GACACTCTCAGAAGTGATAAAAAGGGGATTTACACCTCTAACTACTCCTG
AAATTGTAAGATCCTCTGTTGTTGAAAAGTGTGGCTTCCAACCTCGTGGA
GCAAATACCCAGGTTTATTCTATCGAGGGAGCTGATCAATGCCTCATTGG
CACTGCAGAGATTCCTGTTGGAGGAATTCATATGGATTCTATTCTTTCTG
AGTCATTGTTGCCTTTAAAGTATGCAGCGTTTTCCCATTGCTTCCGTACT
GAGGCAGGTGCGGCAGGCACAGCAACAAGGGGTCTTTATCGAGTTCACCA
GTTCAGCAAACTGGAGATGTTCGTCTTTTGCCAACCAGAGGAGAGTGATT
CATACCATGAGGAGCTCATTAGAATTGAAGAAGACCTTTACTCATCACTA
GGATTACACTTCAAAACTGTAGACATGGCTACTGAAGATTTAGGTGCCCC
GGCTTATCGAAAATTTGATGTGGAAGCATGGATGCCAGGCTTGGGACGAT
ATGGCGAGATATCAGTGCATCAACTGTACGGACTAT
back to top