FC920661

Overview
NameFC920661
Unique NameFC920661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12205 contig Ccv1_Contig12205:5..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_TOBAC (Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 2.659e-107
Identity = 185/207 (89.37%), Postives = 193/207 (93.24%), Query Frame = 1
Query:   58 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            MP IPEEPLLA +PDRFCMFPIQYPQIWEMYKKA ASFWTAEEVDLS D RHWE LT  E+HF+THVLAFFAASDGIVLENLAGRFM EVQVAEARAFYGFQIAIENIHSEMYSLLLE+YIKDSDEK+RLF A+ET PCV KKA WAL WIDGSETFAERL+AFACVEGIFFSGSFCAIFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    1 MPLIPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSRLFRAVETNPCVEKKAKWALRWIDGSETFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCD 207          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2C_ARATH (Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 3.363e-102
Identity = 175/208 (84.13%), Postives = 192/208 (92.31%), Query Frame = 1
Query:   58 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            MPS+PEEPLL P PDRFCMFPI YPQIWEMYKKAEASFWTAEEVDLSQD R WE +L   E+HF+ HVLAFFAASDGIVLENLA RFM++VQV+EARAFYGFQIAIENIHSEMYSLLL+TYIKD+ E++ LF AIET+PCVAKKA WA+ WIDGS+TFAER+IAFACVEGIFFSGSFC+IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    1 MPSMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCD 208          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2B_ARATH (Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1)

HSP 1 Score: 369.007 bits (946), Expect = 1.278e-101
Identity = 171/208 (82.21%), Postives = 194/208 (93.27%), Query Frame = 1
Query:   58 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            MPS+PEEP+L P PDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQD R WE +LT DE+HF+ HVLAFFAASDGIVLENL+ RFM++VQ++EARAFYGFQIAIENIHSEMYSLLL+TYIKD+ E++ LF AIET+PCV KKA WA+ WI+GS++FAER++AFACVEGIFFSGSFC+IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    1 MPSMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVTKKAEWAMKWINGSQSFAERIVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCD 208          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2A_ARATH (Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 8.303e-93
Identity = 160/202 (79.21%), Postives = 179/202 (88.61%), Query Frame = 1
Query:   73 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EEPLL     RF MFPI+Y  IWEMYKKAEASFWTAEEVDLS D++ WEALT  EKHF++H+LAFFAASDGIVLENLA RF+ +VQV EARAFYGFQIA+ENIHSEMYSLLLET+IKDS EK+RLF+AIET+PC++KKA W L+WI    +FA RL+AFACVEGIFFSGSFCAIFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   18 EEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCD 219          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_RAT (Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 6.579e-90
Identity = 158/207 (76.33%), Postives = 178/207 (85.99%), Query Frame = 1
Query:   61 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            PSI EEPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKDS E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   66 PSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 272          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_MESAU (Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.466e-89
Identity = 157/213 (73.71%), Postives = 181/213 (84.98%), Query Frame = 1
Query:   43 SALTKMPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            S ++  PS+ +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKDS E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   60 SKVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 272          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VACCA (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Ankara) GN=MVA032L PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.274e-89
Identity = 154/201 (76.62%), Postives = 173/201 (86.07%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    2 EPILAPNPNRFVIFPIQYHDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 202          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 7.274e-89
Identity = 155/207 (74.88%), Postives = 177/207 (85.51%), Query Frame = 1
Query:   61 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            PS+ +EPLL  NP RF +FPI+Y  IW+MYKKAEASFWTAEEVDLS+D++HWEAL  DE+HF++HVLAFFAASDGIV ENL  RF  EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKD  E+  LF+AIET+PCV KKA WAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:   66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 272          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VACCW (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Western Reserve) GN=VACWR043 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.500e-89
Identity = 154/201 (76.62%), Postives = 173/201 (86.07%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 202          
BLAST of FC920661 vs. ExPASy Swiss-Prot
Match: RIR2_VACCC (Ribonucleoside-diphosphate reductase small chain OS=Vaccinia virus (strain Copenhagen) GN=F4L PE=3 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.500e-89
Identity = 154/201 (76.62%), Postives = 173/201 (86.07%), Query Frame = 1
Query:   76 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGITFSNELISRDEGLHCD 678
            EP+LAPNP+RF +FPIQY  IW MYKKAEASFWT EEVD+S+D+  W  LT DEK+F+ HVLAFFAASDGIV ENLA RF TEVQ+ EAR FYGFQ+AIENIHSEMYSLL++TY+KDS+EKN LF+AIET+PCV KKA WA  WI  S  + ERLIAFA VEGIFFSGSF +IFWLKKRGLMPG+TFSNELISRDEGLHCD
Sbjct:    2 EPILAPNPNRFVIFPIQYYDIWNMYKKAEASFWTVEEVDISKDINDWNKLTPDEKYFIKHVLAFFAASDGIVNENLAERFCTEVQITEARCFYGFQMAIENIHSEMYSLLIDTYVKDSNEKNYLFNAIETMPCVKKKADWAQKWIHDSAGYGERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCD 202          
The following BLAST results are available for this feature:
BLAST of FC920661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RIR2_TOBAC2.659e-10789.37Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2C_ARATH3.363e-10284.13Ribonucleoside-diphosphate reductase small chain C... [more]
RIR2B_ARATH1.278e-10182.21Putative ribonucleoside-diphosphate reductase smal... [more]
RIR2A_ARATH8.303e-9379.21Ribonucleoside-diphosphate reductase small chain A... [more]
RIR2_RAT6.579e-9076.33Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MESAU1.466e-8973.71Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_VACCA7.274e-8976.62Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_MOUSE7.274e-8974.88Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_VACCW9.500e-8976.62Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_VACCC9.500e-8976.62Ribonucleoside-diphosphate reductase small chain O... [more]

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Properties
Property NameValue
Genbank descriptionC32011D06EF RVDevelop1 Citrus clementina cDNA clone C32011D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920661 ID=FC920661; Name=FC920661; organism=Citrus clementina; type=EST; length=679bp
CCAAAGAAATAGAAATCAAACATCTCTCTATTCTCCCGAATTAGTGCGCT
TACCAAAATGCCCTCGATTCCCGAAGAGCCGCTCCTAGCCCCAAATCCCG
ATCGATTTTGCATGTTCCCGATTCAGTACCCACAAATTTGGGAAATGTAC
AAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTTTCGCA
AGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCA
CGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAAC
CTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT
CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGC
TGCTTCTAGAAACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTT
CACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGGGCGTT
AAATTGGATCGACGGCTCGGAGACTTTCGCGGAGAGATTAATCGCGTTTG
CTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGG
CTCAAAAAGCGCGGGTTAATGCCGGGGATTACATTCTCAAACGAGTTGAT
CTCGCGAGATGAGGGTCTCCACTGCGATT
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