FC920669

Overview
NameFC920669
Unique NameFC920669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11587 contig Ccv1_Contig11587:107..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN10_ARATH (Endoglucanase 10 OS=Arabidopsis thaliana GN=At1g75680 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.884e-40
Identity = 83/139 (59.71%), Postives = 99/139 (71.22%), Query Frame = 3
Query:  216 MGEKSKSKGCFGWFXXXXXXXXXXGAIVYTIK---KKTSHSDKXXXXXXXXXXXEKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            M EKSKS+G  GWF           A+VYT+K   KK+   D            +KKYA+ALK+A+QFFD+QKSGKL NNKI WRGDS LKDG +  LDL+KG+YDAGDH+KFGFPMAFTATVLS +ILEYGDQM+ V+
Sbjct:    1 MEEKSKSRGWCGWFIAIIVLASVILAVVYTVKLRTKKSGDDDGGGPVPGPPGAIDKKYADALKLALQFFDIQKSGKLENNKIPWRGDSGLKDGSEDNLDLSKGLYDAGDHIKFGFPMAFTATVLSWSILEYGDQMNAVN 139          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN2_ARATH (Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g19940 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.668e-35
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  291 AIVYTIKKKTSHSDKXXXXXXXXXXXEKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            A+++TI+ +++HSD             K YA ALK+AMQFFD+QKSGKL NN+ISWRGDS LKDG +  +DL+KG+YDAGDHMKFGFPMAFTATVLS +ILEYGDQM
Sbjct:   27 AVIFTIRHRSNHSDDDGSNV-------KNYANALKIAMQFFDIQKSGKLENNEISWRGDSGLKDGSEASIDLSKGLYDAGDHMKFGFPMAFTATVLSWSILEYGDQM 126          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN24_ORYSJ (Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.241e-33
Identity = 74/133 (55.64%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  228 SKSKGCFGWFXXXXXXXXXXGAIVYTIKKK-----TSHSDKXXXXXXXXXXXEKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            SK+KGC GW            A V  I KK     +    K           + KY +AL VA+QFF VQK+GKL NN+I WRGDSAL DG+  GLDL+KGMYDAGDH+KF FPMAFTATVLS +ILEYGDQM
Sbjct:    3 SKTKGCCGWLIVALVASLVATAAVVAIMKKKVGGGSGRKLKPLPVPGPPGAIDSKYGDALGVALQFFQVQKAGKLENNQIPWRGDSALDDGKPAGLDLSKGMYDAGDHIKFSFPMAFTATVLSWSILEYGDQM 135          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN18_ORYSJ (Endoglucanase 18 OS=Oryza sativa subsp. japonica GN=Os06g0715300 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.177e-31
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 3
Query:  369 EKKYAEALKVAMQFFDVQKSGKLVNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQMDVVD 623
            + KYA+AL VA+QFF VQKSGKLVNN I WRGDSAL DG++ G+DL+KGMYDAGDHMKFGFPMAFTAT+LS ++LEYGD M   D
Sbjct:   47 DHKYADALAVALQFFQVQKSGKLVNNTIHWRGDSALDDGKEAGIDLSKGMYDAGDHMKFGFPMAFTATMLSWSVLEYGDAMRAAD 131          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN4_THEFU (Endoglucanase E-4 OS=Thermomonospora fusca GN=celD PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.795e-22
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILE 596
            YAEAL+ +M F++ Q+SGKL  NN++SWRGDS L DG D+GLDLT G YDAGDH+KFGFPMAFTAT+L+   +E
Sbjct:   52 YAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGFPMAFTATMLAWGAIE 125          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN12_ARATH (Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44540 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 46/79 (58.23%), Postives = 63/79 (79.75%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YAEAL+ ++ +F+ Q+SGKL  N K++WRGDSALKDG D  +DLT G YDAGD+MKFGFP+AFT T+L+ + +E G ++
Sbjct:   34 YAEALQKSLLYFEAQRSGKLPPNQKVTWRGDSALKDGSDAHIDLTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMGSEL 112          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN13_ARATH (Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44550 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.059e-20
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            YAEALK ++ +F+ Q+SGKL  N +++WRGDSAL+DG D  +DLT G YDAGD+MKFGFP+AFT T+L+ + +E   Q+
Sbjct:   34 YAEALKNSLLYFEAQRSGKLPPNQRVTWRGDSALRDGSDAHIDLTGGYYDAGDNMKFGFPLAFTTTMLAWSNIEMASQL 112          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUN5_ORYSJ (Endoglucanase 5 OS=Oryza sativa subsp. japonica GN=Os02g0151300 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKL-VNNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGDQM 611
            Y EAL  ++ +F+ Q+SG+L  N ++ WRG S L DG + G+DL  G YDAGDH+KFG PMAFT T+LS ++LEYG+++
Sbjct:   30 YGEALSKSLLYFEAQRSGRLPYNQRVRWRGHSGLTDGLEQGVDLVGGYYDAGDHVKFGLPMAFTVTMLSWSVLEYGEEI 108          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNA_BACPU (Endoglucanase A OS=Bacillus pumilus GN=eglA PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.007e-19
Identity = 42/75 (56.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLV-NNKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEY 599
            Y E L+ +M F++ Q+SG+L  +N+++WRGDS LKDG+D+G DLT G YDAGDH+KFG PMA++A VL+  + EY
Sbjct:   49 YVEVLQKSMLFYEAQRSGRLPESNRLNWRGDSGLKDGKDVGHDLTGGWYDAGDHVKFGLPMAYSAAVLAWTVYEY 123          
BLAST of FC920669 vs. ExPASy Swiss-Prot
Match: GUNA_CALSA (Endoglucanase A OS=Caldocellum saccharolyticum GN=celA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.129e-19
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 3
Query:  378 YAEALKVAMQFFDVQKSGKLVN-NKISWRGDSALKDGRDMGLDLTKGMYDAGDHMKFGFPMAFTATVLSXAILEYGD 605
            Y EAL+ A+ F++ Q SGKL N  + +WRGDSALKDG+D GLDLT G +DAGDH+KF  PM++T T+LS A  EY D
Sbjct:   28 YGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNLPMSYTGTMLSWAAYEYKD 104          
The following BLAST results are available for this feature:
BLAST of FC920669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
GUN10_ARATH6.884e-4059.71Endoglucanase 10 OS=Arabidopsis thaliana GN=At1g75... [more]
GUN2_ARATH6.668e-3565.42Endoglucanase 2 OS=Arabidopsis thaliana GN=At1g199... [more]
GUN24_ORYSJ6.241e-3355.64Endoglucanase 24 OS=Oryza sativa subsp. japonica G... [more]
GUN18_ORYSJ1.177e-3174.12Endoglucanase 18 OS=Oryza sativa subsp. japonica G... [more]
GUN4_THEFU3.795e-2266.22Endoglucanase E-4 OS=Thermomonospora fusca GN=celD... [more]
GUN12_ARATH1.221e-2058.23Endoglucanase 12 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN13_ARATH6.059e-2056.96Endoglucanase 13 OS=Arabidopsis thaliana GN=At2g44... [more]
GUN5_ORYSJ2.302e-1953.16Endoglucanase 5 OS=Oryza sativa subsp. japonica GN... [more]
GUNA_BACPU3.007e-1956.00Endoglucanase A OS=Bacillus pumilus GN=eglA PE=1 S... [more]
GUNA_CALSA5.129e-1959.74Endoglucanase A OS=Caldocellum saccharolyticum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32011E04EF RVDevelop1 Citrus clementina cDNA clone C32011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920669 ID=FC920669; Name=FC920669; organism=Citrus clementina; type=EST; length=625bp
CAGCTGCTTCAATTTCATTGTATTAGAGAATTTGCTAAACTGATTCAGCA
GCCAAATTAAGCTTCTTACCACTCACCTTTCACCCACTAGAGAGAAATAC
GGTGCTGCGTTTTTCACCGTTTGAAGACCCTACGCACAAAGCTCTTACTC
TCTTCACCCAATGCCGGCATTTTGAGTTAGATTTAGATCTGAGAACTTGA
CGGCATTGTGTTAAAATGGGGGAGAAATCAAAGTCCAAGGGTTGTTTCGG
ATGGTTCTTGGTCCTAGTCCTATTGGCTCTAGTTGTTGGCGCAATTGTTT
ACACTATTAAAAAGAAAACAAGTCACTCTGATAAACCGGCTCCGGTTCCC
GGTCCCCCCGGCGCCGTCGAGAAAAAGTATGCTGAAGCCCTCAAAGTCGC
AATGCAGTTCTTCGACGTACAAAAATCGGGAAAGTTAGTGAATAATAAGA
TATCATGGAGAGGGGATTCGGCTCTTAAAGATGGAAGAGACATGGGTTTG
GATCTCACAAAAGGCATGTATGATGCTGGGGATCATATGAAGTTTGGGTT
TCCGATGGCTTTTACTGCGACTGTGTTGTCGTGNGCCATCCTTGAGTATG
GAGATCAGATGGACGTTGTGGATCA
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