FC920679

Overview
NameFC920679
Unique NameFC920679
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:50..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 3.916e-98
Identity = 176/210 (83.81%), Postives = 192/210 (91.43%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            KAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDITAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMEDE
Sbjct:    5 KAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDE 214          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 342.813 bits (878), Expect = 9.982e-94
Identity = 168/210 (80.00%), Postives = 186/210 (88.57%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDE
Sbjct:    5 KSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDE 214          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 1.304e-93
Identity = 168/210 (80.00%), Postives = 186/210 (88.57%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L EDE
Sbjct:    5 KSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDE 214          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 333.569 bits (854), Expect = 6.056e-91
Identity = 159/210 (75.71%), Postives = 183/210 (87.14%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K QK+ AY+KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+E
Sbjct:    6 KTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEE 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.762e-90
Identity = 159/210 (75.71%), Postives = 182/210 (86.67%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K QK+ AY KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+E
Sbjct:    6 KTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEE 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.110e-87
Identity = 157/210 (74.76%), Postives = 179/210 (85.24%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG+VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+E
Sbjct:    9 KTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEE 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 7.696e-70
Identity = 130/210 (61.90%), Postives = 156/210 (74.29%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+KAYFKRYQVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI AQ+  + I GD+V+ASAYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK  +AE HR  I   HVA YM  L E++
Sbjct:    5 KVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEED 214          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.313e-69
Identity = 128/210 (60.95%), Postives = 158/210 (75.24%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+KAYFKRYQVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKD+ AQ+  + I GD+V+ASAY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK+ +AE HR  I   HVA YM  L E++
Sbjct:    5 KVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEED 214          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.714e-69
Identity = 132/211 (62.56%), Postives = 158/211 (74.88%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+KAYFKRYQVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DI  QII A I GD VL SAYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L +  +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++S QL+A+  R+YI+ GHV+ YM+ L E++
Sbjct:    5 KVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEED 215          
BLAST of FC920679 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 9.408e-68
Identity = 125/211 (59.24%), Postives = 155/211 (73.46%), Query Frame = 2
Query:   56 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMEDE 685
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  +     F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + EVHRK+I+  +VA YMR LME++
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEED 215          
The following BLAST results are available for this feature:
BLAST of FC920679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_CUCSA3.916e-9883.8160S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH9.982e-9480.0060S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH1.304e-9380.0060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSI6.056e-9175.7160S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ1.762e-9075.7160S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ3.110e-8774.7660S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_CAEBR7.696e-7061.9060S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL1.313e-6960.9560S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_SUBDO1.714e-6962.5660S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5A_XENLA9.408e-6859.2460S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionC32011F05EF RVDevelop1 Citrus clementina cDNA clone C32011F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920679 ID=FC920679; Name=FC920679; organism=Citrus clementina; type=EST; length=686bp
AAACTTCTCGAACTCTGCTGCTTCTACACTTTGAGCTTCAGCAATGGCCT
TTGCCAAAGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAG
TACAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCT
GATCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTG
TGCGATTCACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATA
GCCGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTA
TGGTCTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGAC
TCCTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTAT
GAGGGGCACGTTGAGGCAACAGGAGAGGACTATTCAGTTGAGCCAACTGA
GAACAGGAGGCCTTTCCGTGCCCTGCTTGATGTTGGTCTTGTGAAAACAA
CTACTGGTAACCGTGTCTTTGGCGCTCTTAAGGGTGCATTGGATGGTGGA
CTTGATATCCCTCACAGTGAGAAGAGATTTGCTGGATTCAGTAAGGATAG
TAAGCAACTTGACGCTGAAGTTCACCGTAAATACATCTATTGTGGTCATG
TCGCTGCCTACATGAGGACTTTGATGGAAGATGAGC
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