FC920705

Overview
NameFC920705
Unique NameFC920705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7178 contig Ccv1_Contig7178:378..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920705 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 63/174 (36.21%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  144 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPL 650
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA ++ +  L
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL 210          
BLAST of FC920705 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 61/176 (34.66%), Postives = 91/176 (51.70%), Query Frame = 3
Query:  144 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPL 650
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG++ +  L
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL 212          
BLAST of FC920705 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.070e-19
Identity = 62/180 (34.44%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  144 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGD 632
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD 213          
BLAST of FC920705 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.752e-18
Identity = 66/199 (33.17%), Postives = 96/199 (48.24%), Query Frame = 3
Query:  102 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIH 677
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V G I +H
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLH 218          
BLAST of FC920705 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.622e-11
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  141 VKFLS--EPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVA 617
            VKFL+  + VPP SD  ++V   + T N    + VR+Y P+          K+K     + + HGGG+CV  A    Y  +  + A  +  + VS   R APE+  P  F+D ++AL W     + +            VD +RV + GDS+GGN+   VA
Sbjct:   61 VKFLTSFQEVPPTSD--ENVTVTETTFNN---VPVRVYVPKR---------KSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYG---------VDPERVGVSGDSAGGNLAAAVA 198          
The following BLAST results are available for this feature:
BLAST of FC920705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH7.600e-2236.21Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH7.114e-2034.66Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ2.070e-1934.44Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L2_ARATH1.752e-1833.17Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
AAAD_RABIT4.622e-1131.68Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
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Properties
Property NameValue
Genbank descriptionC32012A05EF RVDevelop1 Citrus clementina cDNA clone C32012A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920705 ID=FC920705; Name=FC920705; organism=Citrus clementina; type=EST; length=678bp
ATCCAAAATAATTAACTCACCCAACACTCAACTAGGTAGCTATGGTGAAC
GATGGAAGAGCAATAGTGGATGAAGTGTCCGGTTGGCTAAGAGTCTACAG
CGACGGTTCAGTTGATCGAACATGGACCGGACCACCGGAGGTCAAGTTCT
TGTCCGAACCGGTGCCACCCCACAGTGACTTTATTGACAGTGTCGCCACC
CACGACGTAACCATCAACAAAGAATCCGGCCTCCGTGTCCGAATTTATTC
ACCGGAGGAGATCAAGAAACTTAATGGTGATGATTGCAAGAACAAGAAGA
AGCTACCAATCATCCTTCACTTTCATGGGGGTGGTTTTTGCGTTAGCCAA
GCTGATTGGTACATGTACTATCACGTTTACACGAAGCTTGCAAAATCTGT
CCCGGCTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCGGAGCACCGCC
TCCCGGCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTGGCTCCGGTCA
CTATCACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGCTGACTGAACA
TGTGGATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCCGGAGGGAACG
TAGTGCATGAAGTGGCGGCACGTGCAGGTGACGCGGACTTGAGCCCGTTG
CGTGTGGCCGGAGCGATTCCGATTCATC
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