FC920718

Overview
NameFC920718
Unique NameFC920718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14183 contig Ccv1_Contig14183:79..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920718 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.401e-27
Identity = 65/133 (48.87%), Postives = 86/133 (64.66%), Query Frame = 3 
Query:   63 ENMDRVYIDGERLTAGMVFKKDSSAVIKIRQRLPDFLQSVKLKYVKLGYGYSCNFATIIMFVLIVPLSIATVIQLSGLKLDRILELLSKEKLQLNMIIDAASDQLAVSTMLFFLFGLYWSKRSSPVYLVHFSC 461
            E  + + +D ERLTA M F+  SSAVI+IR+RLPD L SVKLKYVKLG   SCN  TI+ F++I+PL+   ++QL+GL  D   EL S + +QL+      + +L     L F+  LY + RS PVYLV FSC
Sbjct:    2 ERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLD-----TATRLTCLVFLSFVLTLYVANRSKPVYLVDFSC 129
The following BLAST results are available for this feature:
BLAST of FC920718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KCS1_ARATH9.401e-2748.873-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC32012B08EF RVDevelop1 Citrus clementina cDNA clone C32012B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920718 ID=FC920718; Name=FC920718; organism=Citrus clementina; type=EST; length=503bp
CCCCAGCTCCTTTACATTCCCTTGGTCATAAATTTAACAAAAAAAGAACA
CAGAGGGACAGGGAGAACATGGATAGAGTATACATTGATGGAGAGAGATT
GACGGCGGGGATGGTCTTTAAAAAGGACTCCTCCGCCGTCATCAAGATTC
GACAACGCTTGCCGGATTTTCTACAATCCGTGAAGCTCAAGTATGTGAAG
CTAGGATATGGGTACTCATGCAATTTTGCAACAATTATCATGTTTGTTCT
TATAGTACCTCTGTCCATAGCTACCGTAATACAGCTCAGCGGTCTGAAAT
TGGACCGGATTCTGGAGTTGTTATCTAAGGAAAAGCTTCAACTCAACATG
ATCATTGATGCAGCCAGTGATCAGTTAGCAGTTTCAACAATGTTATTTTT
CCTCTTCGGCCTTTACTGGTCGAAGCGTTCGAGTCCAGTTTATCTCGTGC
ACTTCTCGTGTTAAAACCGGCTGATGAAGTAAAATGACTATGGAGGCGTT
CTT
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