FC920726

Overview
NameFC920726
Unique NameFC920726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920726_ssr139 microsatellite FC920726_ssr139:139..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14184 contig Ccv1_Contig14184:1..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.961e-32
Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 3
Query:  315 HSTANWCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            H++A+WCVCK G+ D VLQK LDYACG GADCNP H  G C+NP+ V+AHC+YAVNS+FQ+KGQA  SC+F+G+AT+ TTDPS
Sbjct:   16 HTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPS 98          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.116e-28
Identity = 51/83 (61.45%), Postives = 65/83 (78.31%), Query Frame = 3
Query:  315 HSTANWCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            HS+A+WCVCK G+ D VLQ  LDYACG GADCNP      C+NP+ V++HC+YAVNS+FQ+KGQ+ GSC+F G+AT   +DPS
Sbjct:   16 HSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPS 98          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.853e-24
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 3
Query:  315 HSTANWCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPSTA 569
            +S A +C+CK+G  + VLQKA+DYACG GADC  I   G CY PNTVK HC  AVNSY+Q+K  +  +CDF+G+A+ +TT PSTA
Sbjct:   16 YSNAAYCLCKEG-NEQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPPSTA 99          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 42/79 (53.16%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  330 WCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            +C+  DGV    LQ ALD+ACG G ++C+ I     CY PN VK H S+A NSY+Q++G+A GSCDF G A + TTDPS
Sbjct:  272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPS 350          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 3
Query:  330 WCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            +C+ K+ V   +LQ ALD+ACG G  DC+ +     CY P+ V AH +YA N+Y+Q+ G+A GSCDF G ATV TTDPS
Sbjct:  360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPS 438          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.824e-17
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 3
Query:  330 WCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            WCV KDG     LQ  ++YACG   DC PI S G C++PN+++AH SY +N+Y+Q  G    +CDF G+  V ++DPS
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPS 453          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.182e-16
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  318 STANWCVCKDGVGDPVLQKALDYACGAGADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            +++ WCV K G  +  LQ +LD+ACG G DC  I   G C+ PN V +H +YA+N YFQ+  +    CDFS +ATV + +PS
Sbjct:  360 TSSGWCVPKKGATNEELQASLDWACGHGIDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPS 441          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 3
Query:  330 WCVCKDGVGDPVLQKALDYACGAGA-DCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            +C  ++G    +LQ ALD+ACG G  DC+PI     CY P+ V AH +YA ++Y+ + G    +C+F+G A++ TTDPS
Sbjct:  368 YCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPS 446          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 3
Query:  315 HSTANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            + ++ +CV K    D  L   L++ACG G A+C  I    PCY PN VK+H S+A N Y+Q+   A G+CDF G+A   T DPS
Sbjct:  357 NGSSMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPS 440          
BLAST of FC920726 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.491e-14
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 3
Query:  321 TANWCVCKDGVGDPVLQKALDYACGAG-ADCNPIHSNGPCYNPNTVKAHCSYAVNSYFQRKGQAQGSCDFSGSATVATTDPS 563
            T  WC+         LQ ALD+ACG G  DC+ +  + PC+ P+TV +H SYA N+Y+Q+ G +   C F+G++     DPS
Sbjct:  388 TKKWCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPS 469          
The following BLAST results are available for this feature:
BLAST of FC920726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
E13L3_ARATH9.961e-3267.47Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH5.116e-2861.45Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH5.853e-2457.65Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E131_ARATH3.324e-1953.16Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E133_ARATH8.186e-1851.90Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13B_WHEAT1.824e-1747.44Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E137_ARATH1.182e-1645.12Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_ARATH8.472e-1543.04Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E134_ARATH3.219e-1444.05Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1312_ARATH5.491e-1440.24Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32012C05EF RVDevelop1 Citrus clementina cDNA clone C32012C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920726 ID=FC920726; Name=FC920726; organism=Citrus clementina; type=EST; length=653bp
GCGAGAAAAAGTGAAGTAAGCAACCACGAAAAAAAAAAAAAGCACTCACA
AACCGACACCTTCGTCCCACCGCCATTTGTCTACATATAATCCCCCTTGC
ATTTCTCACAATCTCCTATAGCGTCACGAACTTTTTCATCTCTCTCTCAG
TCCCTCTCAAAGGCCTCAGCTTAGCTGCTGTGTGTGTTGTGACAAACTTT
TCTCGGAGCCAAACAAGCAAGTATTTGTTATTATTATCTCTTCTCTAAGC
TTCTTTTGCTCATTCAGTGATGGCTGTTTTGGTGCTTTTAGCTCTCTTCC
TTGGCTTCACTGGGCATTCAACTGCAAACTGGTGTGTTTGCAAAGATGGA
GTGGGTGACCCAGTTTTACAAAAAGCTTTGGACTATGCTTGTGGAGCTGG
GGCTGATTGTAACCCTATCCATTCCAATGGGCCTTGTTACAACCCCAACA
CTGTCAAAGCTCACTGCAGTTATGCTGTCAACAGCTATTTCCAGAGAAAG
GGTCAAGCTCAAGGCTCTTGTGATTTTTCCGGAAGTGCAACCGTTGCCAC
TACCGATCCCAGCACTGCTGGCTGTTCTTATCCTTCAAGTGCCAGCACTT
CAGGCACCACCTCAACAACACCAGTCACAGGTACTCCAGGCACAACCACA
CCC
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