FC920738

Overview
NameFC920738
Unique NameFC920738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920738_ssr441 microsatellite FC920738_ssr441:441..458. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9536 contig Ccv1_Contig9536:18..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920738 vs. ExPASy Swiss-Prot
Match: ZDH15_ARATH (Probable S-acyltransferase At4g00840 OS=Arabidopsis thaliana GN=At4g00840 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.753e-29
Identity = 74/163 (45.40%), Postives = 92/163 (56.44%), Query Frame = 1
Query:  175 INLFKLCSGLKVLGYFMILLXXXXXXXXXXXXXXXTCGPQLLRG--GVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCKNVMVK-DVFLRWITTVFG 654
            +NLF+ CSGLKVLGYFMILL               T  P L+RG  G  S     II +FH LL+ML+WSY   VF DPGSVPE++R          G +LEAGTS+          +G   S+G+C +C+N KPPRCHHCSVC+  ++K D    WI    G
Sbjct:    1 MNLFRFCSGLKVLGYFMILLVVAVVGVSYYAVVVSTWWPILIRGDHGALSALAALIIFVFHFLLIMLLWSYFTTVFTDPGSVPEHFRREMGG-----GDSLEAGTSTD---------QGAFGSLGYCTKCRNVKPPRCHHCSVCQRCVLKMDHHCVWIVNCVG 149          
BLAST of FC920738 vs. ExPASy Swiss-Prot
Match: ZDH14_ARATH (Probable S-acyltransferase At3g60800 OS=Arabidopsis thaliana GN=At3g60800 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.042e-24
Identity = 67/164 (40.85%), Postives = 82/164 (50.00%), Query Frame = 1
Query:  178 NLFKLCSGLKVLGYFMILLXXXXXXXXXXXXXXXTCGPQLLRGGVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSS--QSLDNVG--PDARGPSRSVGFCDRCQNGKPPRCHHCSVCKNVMVK-DVFLRWITTVFG 654
            N+FK C+ L+ LG  MILL                 GP L +GG+ S    +I+ILFH LL ML+WSY  VVF DPG VP NWR            + E G S    SLD VG   D+   +  V FC +C   KP RCHHCSVC   ++K D    W+    G
Sbjct:   11 NVFKFCTALRGLGSIMILLVLGVVGVTYYAVVLTNYGPALSQGGLDSLAALTILILFHFLLAMLLWSYFSVVFTDPGVVPPNWR---------PSTDEERGESDPLNSLDFVGLQSDSSSSNPRVRFCRKCNQLKPSRCHHCSVCGRCVLKMDHHCVWVVNCVG 165          
BLAST of FC920738 vs. ExPASy Swiss-Prot
Match: ZDH18_ARATH (Probable S-acyltransferase At4g22750 OS=Arabidopsis thaliana GN=At4g22750 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.911e-22
Identity = 57/160 (35.62%), Postives = 75/160 (46.88%), Query Frame = 1
Query:  178 NLFKLCSGLKVLGYFMILLXXXXXXXXXXXXXXXTCGPQLLRGGVHSFFGFSIIILFHILLVMLVWSYVMVVFWDPGSVPENWRXXXXXXXXXXGVNLEAGTSSQSLDNVGPDARGPSRSVGFCDRCQNGKPPRCHHCSVCKNVMVK-DVFLRWITTVFG 654
            N+FK C+ L+ LG  MIL+                 GP LL GGV S     ++  FH LL+ML+WSY  VV  DPG VP  WR           +++E    +Q+L          S  V +C +C   KPPR HHCSVC   ++K D    W+    G
Sbjct:    4 NVFKFCTALRALGSIMILIVIGIIGFTYYAVVVVNYGPALLIGGVDSLLSVLVLAFFHFLLIMLLWSYFSVVVTDPGGVPTGWRPE---------LDIEKSEGNQALIGEASVGDSSSHGVRYCRKCNQYKPPRSHHCSVCGRCILKMDHHCVWVVNCVG 154          
The following BLAST results are available for this feature:
BLAST of FC920738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ZDH15_ARATH2.753e-2945.40Probable S-acyltransferase At4g00840 OS=Arabidopsi... [more]
ZDH14_ARATH2.042e-2440.85Probable S-acyltransferase At3g60800 OS=Arabidopsi... [more]
ZDH18_ARATH1.911e-2235.63Probable S-acyltransferase At4g22750 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC32012D11EF RVDevelop1 Citrus clementina cDNA clone C32012D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920738 ID=FC920738; Name=FC920738; organism=Citrus clementina; type=EST; length=660bp
TACAAACTACTCTCGAACTGTGCCCTAATTTCTCTTCTGAATTAAAGTTA
CCGGGACACATCAACTCCAGGCAAGAACAGGTAAAACCTGGCTTCGGATA
TCTGGAAACGCCTGTTCCCACCGCGATCCAGAAGATACCAACCAATCATC
CCCGAAATCAACTTGGGCATGGACATAAACCTTTTCAAGCTCTGTTCCGG
CCTCAAAGTGCTGGGCTACTTCATGATCCTGCTAGTGGCCGCAATTATCG
CTGTGTCGTACTACGCCGTCGTTGTAATTACCTGTGGCCCACAGTTGCTT
CGCGGCGGAGTCCACTCTTTTTTTGGGTTCTCAATAATTATTCTATTCCA
TATTCTGCTTGTAATGTTGGTATGGAGCTATGTTATGGTAGTGTTTTGGG
ACCCTGGTTCTGTGCCTGAAAATTGGAGGTCAGTTTCAGTATCATCATCA
TCATCATCGGGGGTGAATTTAGAGGCTGGTACTTCTTCTCAATCATTAGA
TAACGTGGGACCGGATGCACGGGGTCCTTCACGGTCGGTAGGCTTCTGTG
ATCGATGCCAAAATGGGAAGCCTCCCCGTTGCCATCATTGTTCTGTTTGT
AAGAACGTTATGGTCAAAGATGTGTTCTTAAGATGGATCACCACTGTGTT
TGGGTGGTGA
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