FC920741

Overview
NameFC920741
Unique NameFC920741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920741_ssr38 microsatellite FC920741_ssr38:38..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6366 contig Ccv1_Contig6366:69..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.576e-60
Identity = 114/181 (62.98%), Postives = 137/181 (75.69%), Query Frame = 1
Query:  115 ISTLLSRSFPSAXXXXXXXXXXXXXXARGISRFSTAAVVEEPII-PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGN 654
            +S+LLSRSF ++                 + RF T++   E II P VQ+S+T+ LING FVD+ASGKTFP  DPRT EVIA+VAEGDAEDI+RAV  AR AFDEGPWPKM+ YERSR++LR ADL+EK+ EELA+LETW+NGKPY QSL +E+PM  RL  YYAGWADKIHGLT+P DGN
Sbjct:    6 VSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGN 186          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.343e-58
Identity = 113/180 (62.78%), Postives = 135/180 (75.00%), Query Frame = 1
Query:  115 ISTLLSRSFPSAXXXXXXXXXXXXXXARGISRFST-AAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDG 651
            +S+LLSRSF S+               RG  R+S  AA VE  I PPV++ +T+ LI G+FVDA SGKTFP  DPR  EVIA V+EGDAED++RAVA ARKAFDEGPWPKMT YERS+I+ R ADLIEK+ +E+AALETW+NGKPY QS   EVPM+ R+  YYAGWADKIHG+T+PGDG
Sbjct:    6 VSSLLSRSFMSSSRSIFSLRGMN----RGAQRYSNLAAAVENTITPPVKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDG 181          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 71/139 (51.08%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  256 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +I +TK  INGQF+DAASGKTF   DPR  EVIA +AEGD ED+D AV  AR AFD GPWP+MT +ER++++ + ADLIE+N+EELA L+  + GK +     +++P       Y AG ADKIHG T+     ++F +T
Sbjct:   16 EIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIPATAGHFRYNAGAADKIHGETLKMTRQSLFGYT 154          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 73/140 (52.14%), Postives = 95/140 (67.86%), Query Frame = 1
Query:  256 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++ Y +  IN ++ DA S KTFP  +P T EVI  VA GD ED+DRAV  AR AF  G PW +M   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   16 EVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-FFSYT 154          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 72/140 (51.43%), Postives = 96/140 (68.57%), Query Frame = 1
Query:  256 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            ++ Y +  IN ++ DA S KTFP  +P T +VI +VAEGD  D+DRAV  AR AF  G PW +M   ER R++ R ADLIE++   LAALET +NGKPY+ S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   36 EVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-YFSYT 174          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 72/150 (48.00%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  205 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDG 651
            +R+S+AA +  PI+ P  I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+DRAV  AR+AF  G PW +M   ER R++   ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG
Sbjct:   17 ARYSSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDG 165          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 73/140 (52.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  256 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +I Y +  IN ++ DA S KTFP  +P T +VI +VAEGD ED+DRAV  AR AF  G PW ++   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   37 EIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGD-YFSYT 175          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 72/150 (48.00%), Postives = 101/150 (67.33%), Query Frame = 1
Query:  205 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDG 651
            +R+S+AA +  PI+ P  I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+DRAV  AR+AF  G PW +M   ER R++   ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG
Sbjct:   17 ARYSSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDG 165          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 1
Query:  211 FSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDG 651
            +STAA +  PI P  +I Y K  IN ++ DA S KTFP  +P T EVI +VAEGD  D+D AV  AR+AF  G PW +M   ER R++ R ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG
Sbjct:   21 YSTAAALPNPI-PNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDG 167          
BLAST of FC920741 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 78/160 (48.75%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  202 ISRFSTAAVVEEPIIPPVQISYTKN--LINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLXSEVPMVVRLLHYYAGWADKIHGLTVPGDGNTIFNFT 672
            +SR  +AA       P  Q     N   IN ++ DA S KTFP  +P T EVI  VAEG+ ED+D+AV  AR AF  G PW +M   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+  F++T
Sbjct:   15 LSRLLSAAATSAVPAPNHQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGD-FFSYT 173          
The following BLAST results are available for this feature:
BLAST of FC920741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
AL2B4_ARATH5.576e-6062.98Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2B7_ARATH2.343e-5862.78Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL2C4_ARATH1.806e-3451.08Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
ALDH2_HORSE3.407e-3352.14Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
ALDH2_BOVIN4.449e-3351.43Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
AL1B1_HUMAN4.449e-3348.00Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ALDH2_PIG5.811e-3352.14Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
AL1B1_PONAB5.811e-3348.00Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_MOUSE5.811e-3349.32Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
ALDH2_MOUSE1.691e-3248.75Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionC32012E02EF RVDevelop1 Citrus clementina cDNA clone C32012E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920741 ID=FC920741; Name=FC920741; organism=Citrus clementina; type=EST; length=688bp
TGCAGTTGCAAGCTTCACTTGCTAGGACAAAAGTTGCAGAGAGAGAGAGA
GAGAGAGAGAGAGAAGAGTTGAATAGGTCGCTTCTTCGCTTTGGCTATGG
CAGCTGCTCGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCT
TCTCCTTCTCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGG
CATCAGCAGGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCAC
CTGTTCAAATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGAC
GCAGCATCAGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGT
GATTGCTAATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTG
CTACTGCTCGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCT
TATGAGAGGTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAA
CATGGAGGAGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATG
TACAATCTCTCNAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTAT
TATGCTGGATGGGCTGATAAAATCCATGGACTAACCGTCCCTGGTGATGG
AAATACCATATTCAACTTTACATGAACCATTGGCGTTG
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