FC920743

Overview
NameFC920743
Unique NameFC920743
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length679
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP6_HUMAN (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.817e-54
Identity = 114/226 (50.44%), Postives = 140/226 (61.95%), Query Frame = 2
Query:    2 GDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARDRGGTERVWMKSAIVXXXXXXXXXXXXXXXXGLKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGMMNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRSKSADAYKNCDHDPACIAAV 679
            GDVPAAR+IL  A+ A PNSEEIWLAA KLE EN E ERAR LLAKAR    T RV+MKS  +                 L+ +  F KLW+M             A+EAY  GLK CP+  PLWL LS LE  +  L++ARA+L  +R KNP+N  LWL ++R E + G K  A++LMAKALQ C  SGILW+ +I +  RPQRR+KS DA K C+HDP  + AV
Sbjct:  622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHDPHVLLAV 847          
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP6_MOUSE (Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.922e-54
Identity = 112/226 (49.56%), Postives = 141/226 (62.39%), Query Frame = 2
Query:    2 GDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARDRGGTERVWMKSAIVXXXXXXXXXXXXXXXXGLKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGMMNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRSKSADAYKNCDHDPACIAAV 679
            GDVPAAR+IL  A+ A PNSEEIWLAA KLE EN+E ERAR LLAKAR    T RV+MKS  +                 L+ +  F KLW+M             A+EAY  GLK CP+  PLWL LS LE  +  L++ARA+L  +R KNP+N  LWL ++R E + G K  A++LMAKALQ C  SGILW+ ++ +  RPQR++KS DA K C+HDP  + AV
Sbjct:  622 GDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHDPHVLLAV 847          
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP1_SCHPO (Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe GN=prp1 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.633e-41
Identity = 90/216 (41.67%), Postives = 125/216 (57.87%), Query Frame = 2
Query:    5 DVPAARAILQEAYAAIPNSEEIWLAAFKLEFENHEPERARMLLAKARDRGGTERVWMKSAIVXXXXXXXXXXXXXXXXGLKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGMMNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRSKSADAYKNCD 652
            D+  AR IL  A+    NSEEIWLAA ++EF N+E ERAR LLA+AR   GTER+W KS  +                 LK +P + KL++M             A++AY +G K CP  IPLWL L+ LE   + + +AR V   A+ KNP+N  LWL  I+ EL+ GN  +  + +AKALQ C  SG+LW  +I + PR QR++++ DA + C+
Sbjct:  593 DIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESGTERIWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQSVI-RARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGLLWTEAIWLEPRAQRKTRATDALRKCE 807          
BLAST of FC920743 vs. ExPASy Swiss-Prot
Match: PRP6_YEAST (Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevisiae GN=PRP6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 38/128 (29.69%), Postives = 65/128 (50.78%), Query Frame = 2
Query:  242 LKQFPSFFKLWLMXXXXXXXXXXXXXAKEAYESGLKHCPNCIPLWLSLSNLEGM-MNGLSKARAVLTMARKKNPQNAELWLAAIRAELKHGNKKEADSLMAKALQVCRKSGILWAASIEMVPRPQRRS 622
            LK FP   K +L              ++E Y SG +  PNC  LW+SLS ++ + +    +AR++L     KNP +   ++A I+ E++ GN  +A+ L+ +ALQ    + +LW   I++     + S
Sbjct:  661 LKSFPICHKFFLQLGQIYHSMGNIEMSRETYLSGTRLVPNCPLLWVSLSKIDEIDLKNPVRARSILDRGLLKNPDDVLFYIAKIQMEIRLGNLDQAELLVTQALQKFPSNALLWVEQIKLFKHGNKSS 788          
The following BLAST results are available for this feature:
BLAST of FC920743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRP6_HUMAN5.817e-5450.44Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PR... [more]
PRP6_MOUSE9.922e-5449.56Pre-mRNA-processing factor 6 OS=Mus musculus GN=Pr... [more]
PRP1_SCHPO9.633e-4141.67Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyc... [more]
PRP6_YEAST6.090e-1129.69Pre-mRNA-splicing factor 6 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionC32012E06EF RVDevelop1 Citrus clementina cDNA clone C32012E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920743 ID=FC920743; Name=FC920743; organism=Citrus clementina; type=EST; length=679bp
AGGAGATGTGCCTGCAGCACGTGCTATTCTTCAAGAAGCTTATGCTGCTA
TACCAAATTCAGAGGAGATTTGGCTTGCAGCATTTAAGCTTGAGTTTGAG
AACCATGAACCTGAGAGAGCAAGAATGCTTCTTGCTAAGGCAAGAGATAG
GGGTGGTACGGAGAGAGTATGGATGAAATCAGCAATTGTTGAAAGAGAAT
TGGAGAACACCACAGAGGAGAGGAGGTTGCTTGATGAAGGGTTGAAGCAA
TTCCCATCATTTTTCAAGCTGTGGTTGATGCTGGGACAGTTGGAGGAGCG
CCTTGGTCGCTTGGAACAGGCAAAAGAAGCTTATGAGTCGGGTCTTAAGC
ACTGTCCTAACTGTATTCCTCTTTGGCTTTCACTTTCCAATTTGGAAGGA
ATGATGAATGGGCTGAGCAAAGCTCGAGCAGTGCTCACTATGGCTAGGAA
GAAGAATCCTCAAAATGCAGAACTCTGGCTTGCTGCGATTCGAGCTGAGT
TGAAGCATGGAAATAAAAAAGAAGCTGATTCGTTAATGGCCAAGGCATTG
CAGGTGTGTCGGAAGAGTGGTATATTGTGGGCTGCATCAATTGAGATGGT
TCCCCGTCCTCAGCGCAGAAGCAAGAGTGCAGATGCTTACAAGAATTGTG
ATCATGATCCCGCATGTATAGCTGCTGTG
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