FC920748

Overview
NameFC920748
Unique NameFC920748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.405e-35
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            Y LNIWD+GGQ+T+RSYWRNY+E+ D ++WV+D SD+RR+DDCK EL  LL+EE   G
Sbjct:   60 YKLNIWDIGGQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAG 117          

HSP 2 Score: 59.3066 bits (142), Expect = 6.405e-35
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK*ELFI 322
            GLDN+GKTTI+ K NGED S ISPTLGFNI+T+ Y++ +L I
Sbjct:   23 GLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNI 64          

HSP 3 Score: 34.2686 bits (77), Expect = 6.405e-35
Identity = 13/28 (46.43%), Postives = 22/28 (78.57%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALTPQRLLK 675
            ++ +GAS L+ ANKQD++GA+T + + K
Sbjct:  113 EKFAGASFLVFANKQDLDGAMTSEEISK 140          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.517e-32
Identity = 40/62 (64.52%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  423 EFDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            E + YTLN+WDVGGQ+++RSYWRNYFE TDGLVWVVD +D  RL+ C  EL  LL+EE + G
Sbjct:   56 EHNGYTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAG 117          

HSP 2 Score: 51.9878 bits (123), Expect = 7.517e-32
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITY 301
            GLDN+GKTTI+ + NGE    ISPTLGFNIKT+ +
Sbjct:   23 GLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEH 57          

HSP 3 Score: 34.2686 bits (77), Expect = 7.517e-32
Identity = 14/29 (48.28%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            +RL+GA+LL+L NKQD+ GAL+   + ++
Sbjct:  113 ERLAGATLLVLCNKQDLPGALSSNEIKEI 141          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.220e-28
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  426 FDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            F  + LN+WDVGGQ+++RSYW+NYFE TD L+WVVD SD  RL  C  EL  LL+EE + G
Sbjct:   57 FKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSG 117          

HSP 2 Score: 46.2098 bits (108), Expect = 3.220e-28
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK*EL 316
            GLDN+GKTT++ K   E T  I PTLGF+IKT+ ++  +L
Sbjct:   23 GLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQL 62          

HSP 3 Score: 34.6538 bits (78), Expect = 3.220e-28
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            +RLSGASLL+LANK D+ GA+    + +V
Sbjct:  113 ERLSGASLLVLANKSDLPGAIDVNSIAQV 141          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.414e-28
Identity = 64/88 (72.73%), Postives = 70/88 (79.55%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG--ILTDSSK*AGHQWCSYPTEIAKSLNLEA 692
            YTLNIWDVGGQ+TIRSYWRNYFEQTDGLVWVVD SDLRRLDDCKMELDNLLKEE + G  +L  ++K    Q    P EI K LNLE+
Sbjct:   60 YTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANK-QDIQGALTPDEIGKVLNLES 146          

HSP 2 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK 307
            GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTI YQK
Sbjct:   23 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQK 59          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.373e-27
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 3
Query:  426 FDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            F  + LN+WDVGGQ+++RSYW+NYFE TD L+WVVD SD  RL  C  EL  LL EE + G
Sbjct:   57 FKDFQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAG 117          

HSP 2 Score: 46.2098 bits (108), Expect = 3.373e-27
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK*EL 316
            GLDN+GKTT++ K   E T  I PTLGF+IKT+ ++  +L
Sbjct:   23 GLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKDFQL 62          

HSP 3 Score: 33.4982 bits (75), Expect = 3.373e-27
Identity = 15/29 (51.72%), Postives = 22/29 (75.86%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            +RL+GASLL+LANK D+ GA+    + +V
Sbjct:  113 ERLAGASLLVLANKSDLPGAIDVNSIAQV 141          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_BOVIN (ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.570e-22
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVD +D +R+ DC+ EL NLL EE + G
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAG 117          

HSP 2 Score: 33.4982 bits (75), Expect = 2.570e-22
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALT 657
            +RL+GA+LLI ANKQD+ GAL+
Sbjct:  113 ERLAGATLLIFANKQDLPGALS 134          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_HUMAN (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 4.351e-22
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVD +D +R+ DC+ EL +LL EE + G
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 117          

HSP 2 Score: 34.6538 bits (78), Expect = 4.351e-22
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALTPQRLLKV 678
            +RL+GA+LLI ANKQD+ GAL+   + +V
Sbjct:  113 ERLAGATLLIFANKQDLPGALSSNAIREV 141          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_RAT (ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.583e-22
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVD +D +R+ DC+ EL +LL EE + G
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 117          

HSP 2 Score: 33.4982 bits (75), Expect = 9.583e-22
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALT 657
            +RL+GA+LLI ANKQD+ GAL+
Sbjct:  113 ERLAGATLLIFANKQDLPGALS 134          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARL2_MOUSE (ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.583e-22
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  435 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKEEAIRG 608
            + LNIWDVGGQ+++RSYWRNYFE TDGL+WVVD +D +R+ DC+ EL +LL EE + G
Sbjct:   60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG 117          

HSP 2 Score: 33.4982 bits (75), Expect = 9.583e-22
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  592 KRLSGASLLILANKQDINGALT 657
            +RL+GA+LLI ANKQD+ GAL+
Sbjct:  113 ERLAGATLLIFANKQDLPGALS 134          
BLAST of FC920748 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 9.999e-19
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  426 FDWYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDGSDLRRLDDCKMELDNLLKE 593
            F   TL +WDVGGQ+ IR+ W+ YF  T  LV+VVD SD+ R+ + K EL +LL E
Sbjct:   58 FQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAE 113          

HSP 2 Score: 45.4394 bits (106), Expect = 9.999e-19
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 2
Query:  197 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQK 307
            GLD +GKTTI+ K+   +T    PT+GFN++T+T+QK
Sbjct:   24 GLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQK 60          

HSP 3 Score: 25.409 bits (54), Expect = 9.999e-19
Identity = 11/27 (40.74%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  598 LSGASLLILANKQDINGALTPQRLLKV 678
            L+ + LL+ ANKQD+  A +P  L ++
Sbjct:  116 LADSHLLVFANKQDMPNARSPAELTQL 142          
The following BLAST results are available for this feature:
BLAST of FC920748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARL2_DICDI6.405e-3563.79ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL2_DROME7.517e-3264.52ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL2_CAEBR3.220e-2859.02ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARF5_ARATH7.414e-2872.73Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL2_CAEEL3.373e-2759.02ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL2_BOVIN2.570e-2265.52ADP-ribosylation factor-like protein 2 OS=Bos taur... [more]
ARL2_HUMAN4.351e-2263.79ADP-ribosylation factor-like protein 2 OS=Homo sap... [more]
ARL2_RAT9.583e-2263.79ADP-ribosylation factor-like protein 2 OS=Rattus n... [more]
ARL2_MOUSE9.583e-2263.79ADP-ribosylation factor-like protein 2 OS=Mus musc... [more]
ARF11_CAEEL9.999e-1951.79ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC32012E11EF RVDevelop1 Citrus clementina cDNA clone C32012E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920748 ID=FC920748; Name=FC920748; organism=Citrus clementina; type=EST; length=692bp
GACGGCGCAGAGCACAGACGCACTCACTCACACACACCGCACGACGCCCC
CGCTGTCAACTCCGTTCAGGTACACCGGCGTTGCAGCTTCTTGTCGTTCC
AGTCTTCCAGCTGCTGACATCTTGAGCCGTTCACTTCCGATCCAGCTGCT
GCCGTCGCTGCCTCCTTCTTCGTTCGCCGTCGTCAGCCGCACAAGGGGTC
TTGATAATTCTGGGAAGACCACTATTGTTTTGAAGATAAACGGAGAAGAT
ACTAGCGTTATCAGTCCTACACTTGGATTCAATATCAAAACCATTACTTA
CCAAAAGTAAGAACTTTTTATTCCATGATTTAGGATCATTTTATGTCAGC
CAAAAATGAGAATTTGAAGTCTTTAAACGCTGTTTAGTTTTTAGTGCGAA
CATTTTGGTTCCGATATTTTTTGAATTTGACTGGTACACTTTAAACATAT
GGGATGTAGGAGGCCAAAGGACTATAAGATCATATTGGAGGAACTACTTT
GAGCAAACTGATGGTTTGGTGTGGGTGGTTGATGGTTCCGATCTTAGAAG
ACTGGATGATTGCAAAATGGAACTAGACAATCTTTTAAAGGAAGAGGCTA
TCAGGGGCATCCTTACTGATTCTAGCAAATAAGCAGGACATCAATGGTGC
TCTTACCCCACAGAGATTGCTAAAAGTCTGAACTTGGAAGCC
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