FC920750

Overview
NameFC920750
Unique NameFC920750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14190 contig Ccv1_Contig14190:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  257 PEPKVKH--KEVSAVEDAESQQETEGNNKR-HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            PE  VK   +E   V  ++S     G  K+ H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+W
Sbjct:  176 PEESVKEVMEEKEEVRKSKSVSIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETW 254          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  335 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            K H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+W
Sbjct:  201 KEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETW 250          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  335 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            K H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+W
Sbjct:  201 KEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETW 250          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  335 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+W
Sbjct:   72 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETW 121          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:  335 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+W
Sbjct:   72 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETW 121          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:  335 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            K H+N+VFIGHVDAGKST GG ILFL+G VD RT++K E+EAK+  +ESW
Sbjct:  236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESW 285          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  242 SQPVHPEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            S PV  + KV  ++V  V++   +    G  K H++++F+GHVDAGKST GG IL+L+G VD RT+ KYE+EAKD  R+ W
Sbjct:  248 STPVTSD-KVIQEQVDEVDEEVVKDMFGG--KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVDKYEREAKDAGRQGW 325          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 2
Query:  245 QPVHPEPKVKHK-EVSAVEDAESQQETEGNN-----------------------------KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            +PV  E K + K E+  VED +  + T   N                             K H++++F+GHVDAGKST GG +L+L+G VD RTI+KYE+EAKD  R+ W
Sbjct:  198 KPVQTEEKTEEKSELPKVEDLKISESTHNTNNANVTSADALIKEQEEEVDDEVVNDMFGGKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGW 307          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:  335 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            K H++++F+GHVDAGKST GG +LFL+G VD RT++KYE+EAKD  R+ W
Sbjct:  316 KDHMSIIFMGHVDAGKSTMGGNLLFLTGAVDKRTVEKYEREAKDAGRQGW 365          
BLAST of FC920750 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.088e-13
Identity = 36/69 (52.17%), Postives = 49/69 (71.01%), Query Frame = 2
Query:  278 KEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESW 484
            KE     D E  ++  G  K H++++F+GHVDAGKST GG IL+L+G VD RT++KYE+EAKD  R+ W
Sbjct:  269 KEQEDEVDEEVVKDMFGG-KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGW 336          
The following BLAST results are available for this feature:
BLAST of FC920750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERF3B_MOUSE8.051e-1756.96Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB2.342e-1674.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN2.342e-1674.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE5.218e-1672.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN5.218e-1672.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_SCHPO4.884e-1468.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA8.331e-1448.15Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST1.088e-1338.18Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI1.088e-1362.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA1.088e-1352.17Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionC32012F01EF RVDevelop1 Citrus clementina cDNA clone C32012F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920750 ID=FC920750; Name=FC920750; organism=Citrus clementina; type=EST; length=713bp
GAGAACACAAACAATATTATTTCCACTCGCTTCTTTCACTCGATTAAGGA
GGGGAAAAAAAAGAGAAAGAAGAGAAACCCTAGGTGCCTTCATCACTATG
GATATTGAGGAGGATATCCGCTCATTACAGCTTGACTCCGCAGAAGAGAA
TAATGGGGTGGTCAATCCTGGAGATGCAAGGCCAGAAGAAGTTGAGGTGG
TGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGCAGTATCCCAGCCT
GTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTATCTGCGGTGGAAGA
TGCTGAATCTCAGCAAGAGACCGAAGGAAATAATAAGCGACACTTGAATG
TTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTACCACTGGAGGCCAG
ATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAATTCAAAAATATGA
GAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTGAGACTTCATTTTGG
TTAATTTTACTACAGTTCCACCGCTGGGGAGCATACAGGCAGCAAAATCG
CAGAAGGCTATACATTCTAGTATCATTTTATAAATTGGGAAGTTGATTTG
CACCTTGTTTTGGGGCCAAACACTGGAATATTATTAGGTATATGGCGTAT
ATTATGGACACTAATGAAGAGGAGAGGATCAAGGGTAAAACAGTAGAAGT
TGGAAGAGCTCAC
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