FC920755

Overview
NameFC920755
Unique NameFC920755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920755_ssr142 microsatellite FC920755_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14192 contig Ccv1_Contig14192:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: MIS3_SCHPO (Ribosomal RNA assembly protein mis3 OS=Schizosaccharomyces pombe GN=mis3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.243e-51
Identity = 99/153 (64.71%), Postives = 122/153 (79.74%), Query Frame = 1
Query:  253 WDEDPNIDHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711
            WD D +IDHWK+E F    ++   LE SSF+TLFP+YREKYL+E WP V  AL ++G++C L+LVEGSMTV TTRKT DPY I+ ARDLI+LL+RSVP PQA+KI+ D + CDIIKIG+++RNKERFVKRRQ L+G N  TLKAL +LT CYI
Sbjct:   26 WDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVWPHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIMQDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYI 177          
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_YEAST (Ribosomal RNA assembly protein KRR1 OS=Saccharomyces cerevisiae GN=KRR1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.031e-48
Identity = 99/155 (63.87%), Postives = 118/155 (76.13%), Query Frame = 1
Query:  253 WDEDPNIDHWKVEKFDPFWNEGGM--LEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711
            WD D +ID WK+E+F    N  G    E SSF TLFP+YRE YL+  W  V  AL ++ ++C L+LVEGSMTV TTRKT DP II+KARDLI+LL+RSVP PQA+KIL D+M CD+IKIG+ V NKERFVKRRQ LVGPN +TLKAL +LT CYI
Sbjct:   11 WDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRALDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMACDVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYI 164          
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_HUMAN (KRR1 small subunit processome component homolog OS=Homo sapiens GN=KRR1 PE=1 SV=4)

HSP 1 Score: 190.274 bits (482), Expect = 8.819e-48
Identity = 94/146 (64.38%), Postives = 115/146 (78.77%), Query Frame = 1
Query:  274 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711
            D WK   F    N  G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V+  L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV   QA++IL D++ CDIIKIG LVRNKERFVKRRQ L+GP  STLKAL +LT CYI
Sbjct:   38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVNATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYI 183          
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_BOVIN (KRR1 small subunit processome component homolog OS=Bos taurus GN=KRR1 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.819e-48
Identity = 94/146 (64.38%), Postives = 115/146 (78.77%), Query Frame = 1
Query:  274 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711
            D WK   F    N  G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ ++  L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV   QAI+IL D++ CDIIKIG LVRNKERFVKRRQ L+GP  STLKAL +LT CYI
Sbjct:   38 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHINATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAIRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYI 183          
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_MOUSE (KRR1 small subunit processome component homolog OS=Mus musculus GN=Krr1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.504e-47
Identity = 93/146 (63.70%), Postives = 114/146 (78.08%), Query Frame = 1
Query:  274 DHWKVEKFDPFWNEGGMLEVSSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711
            D WK   F    N  G+LE SSF+TLFP+YRE YL+E WP+V+ AL E+ V   L+L+EGSMTV TT+KT DPYII++ARDLI+LL+RSV   QA++IL D++ CDIIKIG LVRNKERFVKRRQ L+GP  STLKAL +LT CY+
Sbjct:   37 DGWKEPAFSKEDNPRGLLEESSFATLFPKYREAYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDDVACDIIKIGSLVRNKERFVKRRQRLIGPKGSTLKALELLTNCYV 182          
BLAST of FC920755 vs. ExPASy Swiss-Prot
Match: KRR1_DICDI (KRR1 small subunit processome component homolog OS=Dictyostelium discoideum GN=krr1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 1
Query:  334 SSFSTLFPQYREKYLQEAWPMVKGALKEYGVSCELNLVEGSMTVSTTRKTRDPYIIVKARDLIRLLSRSVPAPQAIKILDDEMQCDIIKIGHLVRNKERFVKRRQHLVGPNSSTLKAL*ILTGCYI 711
            SSF+TLFP+YREKYLQE W +V+  L E+G+ C+L+L+EGSMTV+TT+K  DP  I+KARDLI+LLSRSVP   A K+L+D+  CDIIKIG  VRNKERFVKRRQ LVGP+ STLKA+ +LT CY+
Sbjct:   58 SSFATLFPKYREKYLQEIWKLVENVLHEHGIECKLDLIEGSMTVTTTKKCWDPVAILKARDLIKLLSRSVPFEHAQKVLNDDYNCDIIKIGGFVRNKERFVKRRQRLVGPDGSTLKAIELLTKCYV 183          
The following BLAST results are available for this feature:
BLAST of FC920755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MIS3_SCHPO2.243e-5164.71Ribosomal RNA assembly protein mis3 OS=Schizosacch... [more]
KRR1_YEAST3.031e-4863.87Ribosomal RNA assembly protein KRR1 OS=Saccharomyc... [more]
KRR1_HUMAN8.819e-4864.38KRR1 small subunit processome component homolog OS... [more]
KRR1_BOVIN8.819e-4864.38KRR1 small subunit processome component homolog OS... [more]
KRR1_MOUSE1.504e-4763.70KRR1 small subunit processome component homolog OS... [more]
KRR1_DICDI2.936e-4366.67KRR1 small subunit processome component homolog OS... [more]
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Properties
Property NameValue
Genbank descriptionC32012F06EF RVDevelop1 Citrus clementina cDNA clone C32012F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920755 ID=FC920755; Name=FC920755; organism=Citrus clementina; type=EST; length=712bp
GGTTGCAATTTGGGAATTAAAATCTCCGCTGTCACCAGAATGTTTCTCAT
CACTTGCCCTAATTCATAACTCAAACGGCACCAAAACGGTAGTTGCCGCC
ACAATCTTTCTTAGTGTTGTAATTGTGGTTTTTTGGATTGGTTCTTCTTC
TTCTTTTGTCAAGACGACGCCGTAAAAGGTCTGGTGATGGGAGAGAACAT
GGAAAAGACGGTGAACAAGAAACACAAAGGAAAGCATGACAAGCCGAAGC
CGTGGGATGAGGATCCGAATATCGATCACTGGAAAGTTGAGAAATTTGAT
CCTTTTTGGAACGAAGGAGGCATGCTCGAAGTCAGCTCCTTCTCTACTCT
CTTCCCCCAATACAGAGAGAAATACTTGCAAGAGGCTTGGCCTATGGTGA
AAGGTGCTTTGAAAGAATATGGTGTTTCTTGTGAGCTAAATCTGGTTGAG
GGTTCCATGACTGTCTCCACAACAAGGAAAACCAGGGATCCTTATATTAT
TGTCAAAGCTAGGGATCTCATTAGGCTTTTGTCGAGAAGTGTCCCTGCAC
CTCAGGCAATCAAAATACTTGATGATGAAATGCAGTGTGACATCATCAAG
ATTGGNCACTTGGTCCGCAATAAGGAACGTTTTGTTAAACGAAGACAGCA
TCTTGTGGGCCCAAATTCTTCCACTCTGAAGGCACTTTGAATACTGACAG
GCTGCTATATTT
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