FC920761

Overview
NameFC920761
Unique NameFC920761
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1B_ORYSJ (Protein argonaute 1B OS=Oryza sativa subsp. japonica GN=AGO1B PE=2 SV=3)

HSP 1 Score: 440.654 bits (1132), Expect = 3.579e-123
Identity = 214/230 (93.04%), Postives = 223/230 (96.96%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F+MSK ++ANVALKINVKVGGRNTVLVDA++RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLV AQAHRQELIQDLFK WQDP RG V+GGMIKELLISF+RATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNH+D+  VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA
Sbjct:  783 FKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWQDPHRGTVTGGMIKELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHNDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 1012          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1_ARATH (Protein argonaute OS=Arabidopsis thaliana GN=AGO1 PE=1 SV=1)

HSP 1 Score: 432.565 bits (1111), Expect = 9.745e-121
Identity = 209/230 (90.87%), Postives = 221/230 (96.09%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F+MSK +MANVALKINVKVGGRNTVLVDA+SRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPE+TKYAGLVCAQAHRQELIQDLFK W+DP +G V+GGMIKELLI+FRR+TG KP RIIFYRDGVSEGQFYQVLLYELDAIRKACASLE  YQPPVTFVVVQKRHHTRLFA NH+DR++VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA
Sbjct:  713 FKMSKQYMANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKEWKDPQKGVVTGGMIKELLIAFRRSTGHKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEAGYQPPVTFVVVQKRHHTRLFAQNHNDRHSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 942          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1A_ORYSJ (Protein argonaute 1A OS=Oryza sativa subsp. japonica GN=AGO1A PE=2 SV=1)

HSP 1 Score: 432.18 bits (1110), Expect = 1.273e-120
Identity = 210/230 (91.30%), Postives = 220/230 (95.65%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F+MSK ++ANVALKINVKVGGRNTVLVDA++RRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLV AQAHRQELIQDLFK W+DP RG VSGGMI+ELLISF+RATGQKPQRIIFYRDGVSEGQFYQVL YELDAIRKACASLE +YQPPVTFVVVQKRHHTRLFANNH D+  VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA
Sbjct:  746 FKMSKQYLANVALKINVKVGGRNTVLVDALTRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKVWKDPQRGTVSGGMIRELLISFKRATGQKPQRIIFYRDGVSEGQFYQVLFYELDAIRKACASLEADYQPPVTFVVVQKRHHTRLFANNHKDQRTVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 975          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PINH_ARATH (Protein PINHEAD OS=Arabidopsis thaliana GN=At5g43810 PE=2 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 3.135e-119
Identity = 206/230 (89.57%), Postives = 221/230 (96.09%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F++SK ++ANV+LKINVK+GGRNTVLVDAIS RIPLVSD PTIIFGADVTHP  GE+SSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL+KTWQDPVRG VSGGMI++LLISFR+ATGQKP RIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTF+VVQKRHHTRLFANNH D+N+ DRSGNILPGTVVD+KICHPTEFDFYLCSHAGIQGTSRPA
Sbjct:  662 FKISKQYLANVSLKINVKMGGRNTVLVDAISCRIPLVSDIPTIIFGADVTHPENGEESSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDKNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPA 891          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1C_ORYSJ (Protein argonaute 1C OS=Oryza sativa subsp. japonica GN=AGO1C PE=2 SV=1)

HSP 1 Score: 422.935 bits (1086), Expect = 7.722e-118
Identity = 203/230 (88.26%), Postives = 222/230 (96.52%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F+M+K  +AN+ALKINVKVGGRNTVLVDA+SRRIPLV+DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLV AQAHRQELI+DL+K WQDP RG VSGGMI+ELLISF+R+TG+KPQRIIFYRDGVSEGQFYQVLLYEL+AIRKACASLE NYQP VTF+VVQKRHHTRLFA+NH+D+N+VDRSGNILPGTVVDSKICHPTEFDFYLCSHAGI+GTSRPA
Sbjct:  675 FKMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIEDLYKIWQDPQRGTVSGGMIRELLISFKRSTGEKPQRIIFYRDGVSEGQFYQVLLYELNAIRKACASLETNYQPKVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIKGTSRPA 904          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: PNH1_ORYSJ (Protein argonaute PNH1 OS=Oryza sativa subsp. japonica GN=PHN1 PE=2 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.720e-117
Identity = 204/230 (88.70%), Postives = 219/230 (95.22%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F++SK ++ANV+LKINVK+GGRNTVL+DAIS RIPLVSD PTIIFGADVTHP  GEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDL+KTW DP RG V+GGMI+ELLISFR+ATGQKP RIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNH DR++ D+SGNILPGTVVDSKICHP+EFDFYLCSHAGIQGTSRPA
Sbjct:  657 FKISKQYLANVSLKINVKMGGRNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPQRGTVTGGMIRELLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHKDRSSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPA 886          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO1D_ORYSJ (Protein argonaute 1D OS=Oryza sativa subsp. japonica GN=AGO1D PE=2 SV=1)

HSP 1 Score: 408.297 bits (1048), Expect = 1.968e-113
Identity = 196/230 (85.22%), Postives = 217/230 (94.35%), Query Frame = 3
Query:    3 FQMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            F+M+K  +AN+ALKINVKVGGRNTVLVDA+SRRIPLV+DRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLV AQ+HRQELI DL+    DP RG + GGM++ELLISF+R+TGQKPQRIIFYRDGVSEGQFYQVLL+ELDAIRKACASLE NYQP VTF+VVQKRHHTRLFA+NH+D+N+VDRSGNILPGTVVDSKICHPTEFDF+LCSHAGI+GTSRPA
Sbjct:  706 FKMNKQILANLALKINVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNSVDRSGNILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPA 935          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.186e-96
Identity = 172/229 (75.11%), Postives = 193/229 (84.28%), Query Frame = 3
Query:    6 QMSKHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPA 692
            +++K +M NVALKINVK GGRNTVL DAI R IPL++DRPTII GADVTHP PGEDSSPSIAAVVAS DWPE+ KY GLV AQAHR+E+IQDL+K  QDP RG V  G+I+E  I+FRRATGQ PQRIIFYRDGVSEGQF QVLL+E+ AIRKAC SL+ NY P VTFV+VQKRHHTRLF   H +R+  D+SGNI PGTVVD+KICHP EFDFYL SHAGIQGTSRPA
Sbjct:  675 KLNKQYMENVALKINVKTGGRNTVLNDAIRRNIPLITDRPTIIMGADVTHPQPGEDSSPSIAAVVASMDWPEINKYRGLVSAQAHREEIIQDLYKLVQDPQRGLVHSGLIREHFIAFRRATGQIPQRIIFYRDGVSEGQFSQVLLHEMTAIRKACNSLQENYVPRVTFVIVQKRHHTRLFPEQHGNRDMTDKSGNIQPGTVVDTKICHPNEFDFYLNSHAGIQGTSRPA 903          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: MEL1_ORYSJ (Protein argonaute MEL1 OS=Oryza sativa subsp. japonica GN=MEL1 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 5.040e-93
Identity = 170/227 (74.89%), Postives = 192/227 (84.58%), Query Frame = 3
Query:   12 SKHHMANVALKINVKVGGRNTVLVDAISRR-IPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            +K ++ NVALKINVKVGGRNTVL  A  R  IP VS+ PTIIFGADVTHP PGEDS+ SIAAVVAS DWPE+TKY GLV AQ HRQE+I+DLF   +DPV+  V+GGMI+ELLI+FR+ TG++P+RIIFYRDGVSEGQF  VLL+E+DAIRKACASLE  Y PPVTFVVVQKRHHTRLF   H  R+  D+SGNILPGTVVD +ICHPTEFDFYLCSHAGIQGTSRP
Sbjct:  735 NKQYLENVALKINVKVGGRNTVLERAFIRNGIPFVSEVPTIIFGADVTHPPPGEDSASSIAAVVASMDWPEITKYRGLVSAQPHRQEIIEDLFSVGKDPVK-VVNGGMIRELLIAFRKKTGRRPERIIFYRDGVSEGQFSHVLLHEMDAIRKACASLEEGYLPPVTFVVVQKRHHTRLFPEVHGRRDMTDKSGNILPGTVVDRQICHPTEFDFYLCSHAGIQGTSRP 960          
BLAST of FC920761 vs. ExPASy Swiss-Prot
Match: AGO12_ORYSJ (Protein argonaute 12 OS=Oryza sativa subsp. japonica GN=AGO12 PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 5.040e-93
Identity = 162/225 (72.00%), Postives = 194/225 (86.22%), Query Frame = 3
Query:   15 KHHMANVALKINVKVGGRNTVLVDAISRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLFKTWQDPVRGAVSGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHHDRNAVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRP 689
            K ++ N+ALK+NVKVGGRNTVL DA+ ++IP+++DRPTI+FGADVTHP PGED+SPSIAAVVAS DWPEVTKY  LV  Q+HR+E+I +L+   +DP++G + GGMI+ELL SF + TGQKP RIIFYRDG+SEGQF QVLLYE+DAIRKACASL+  Y PPVTFVVVQKRHHTRLF  N   R+ +DRSGNILPGTVVD+ ICHP+EFDFYLCSH+GI+GTSRP
Sbjct:  734 KQYLENLALKMNVKVGGRNTVLEDALHKKIPILTDRPTIVFGADVTHPSPGEDASPSIAAVVASMDWPEVTKYKCLVSTQSHREEIISNLYTEVKDPLKGIIRGGMIRELLRSFYQETGQKPSRIIFYRDGISEGQFSQVLLYEMDAIRKACASLQEGYLPPVTFVVVQKRHHTRLFPENR--RDMMDRSGNILPGTVVDTMICHPSEFDFYLCSHSGIKGTSRP 956          
The following BLAST results are available for this feature:
BLAST of FC920761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
AGO1B_ORYSJ3.579e-12393.04Protein argonaute 1B OS=Oryza sativa subsp. japoni... [more]
AGO1_ARATH9.745e-12190.87Protein argonaute OS=Arabidopsis thaliana GN=AGO1 ... [more]
AGO1A_ORYSJ1.273e-12091.30Protein argonaute 1A OS=Oryza sativa subsp. japoni... [more]
PINH_ARATH3.135e-11989.57Protein PINHEAD OS=Arabidopsis thaliana GN=At5g438... [more]
AGO1C_ORYSJ7.722e-11888.26Protein argonaute 1C OS=Oryza sativa subsp. japoni... [more]
PNH1_ORYSJ1.720e-11788.70Protein argonaute PNH1 OS=Oryza sativa subsp. japo... [more]
AGO1D_ORYSJ1.968e-11385.22Protein argonaute 1D OS=Oryza sativa subsp. japoni... [more]
AGOL_ARATH2.186e-9675.11Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
MEL1_ORYSJ5.040e-9374.89Protein argonaute MEL1 OS=Oryza sativa subsp. japo... [more]
AGO12_ORYSJ5.040e-9372.00Protein argonaute 12 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC32012F12EF RVDevelop1 Citrus clementina cDNA clone C32012F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920761 ID=FC920761; Name=FC920761; organism=Citrus clementina; type=EST; length=692bp
GTTTTCAAATGAGCAAGCACCACATGGCCAATGTGGCTTTGAAGATAAAT
GTGAAGGTTGGAGGGAGGAATACTGTGCTTGTTGATGCAATATCAAGGCG
TATACCTCTAGTCAGTGACAGACCCACTATCATTTTTGGTGCTGATGTCA
CCCATCCTCACCCTGGAGAGGATTCAAGCCCGTCTATTGCCGCTGTCGTA
GCTTCTCAGGATTGGCCAGAGGTCACAAAGTATGCTGGATTGGTTTGTGC
TCAAGCTCATAGGCAGGAGCTCATTCAAGACTTGTTCAAGACATGGCAGG
ATCCTGTAAGAGGAGCAGTGTCTGGTGGGATGATCAAGGAACTCCTTATA
TCTTTCCGTAGAGCTACTGGACAAAAGCCTCAGCGCATAATCTTTTACAG
GGATGGTGTCAGTGAAGGACAGTTCTATCAAGTATTATTGTATGAACTTG
ATGCTATCCGTAAGGCATGCGCCTCCTTGGAACCAAACTATCAGCCTCCT
GTGACTTTTGTTGTGGTTCAGAAGCGTCACCACACTAGGTTGTTTGCCAA
CAACCATCATGATCGCAATGCAGTTGACAGGAGTGGAAATATATTGCCTG
GTACTGTTGTGGATTCAAAAATTTGTCACCCAACTGAGTTTGACTTTTAC
CTCTGTAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCC
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