FC920770

Overview
NameFC920770
Unique NameFC920770
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13387 contig Ccv1_Contig13387:377..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.107e-55
Identity = 102/169 (60.36%), Postives = 134/169 (79.29%), Query Frame = 2
Query:  152 MMLVKWLGSVVFLAIGLFTNVLGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            M+L +W    + L + +      A++GVNIGTD++NMP  SDIV +L++ QITHVRLYDA+SHMLKA + + IEV+VGV NEE+L IG        W+NKNVAAY+P+TNITAIAVGS+VLT+IP+ A +L SA+NN+HKALVAS+LNF+VK+S+P SMDI+P+PFPPS
Sbjct:    1 MLLPRWFAEALLLLLSILACSNAAFIGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPS 169          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.236e-39
Identity = 79/144 (54.86%), Postives = 107/144 (74.31%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GVNIGT+V+NMPS + +VA+L++  I  VRLYDAD  ML A + +G++VI+ V N+++LGI +       W+ +NVAAY P TNIT IAVGS+VLTS+ NAASVLVSA+  +  ALV ++L+ Q+K+STPHS  II   FPPS
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPS 166          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.209e-39
Identity = 75/147 (51.02%), Postives = 113/147 (76.87%), Query Frame = 2
Query:  218 GAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            G+Y+GVNIGTD+S+MP  + +VA+L+A +I H+RLY+AD  +L AL+ +GI+VI+ + N+++LGIG+       W+ +NV A+ P T ITA++VGS+VLTS+ NAA VLVSA+ N+H AL++++L+  +K+STP S  +I  PFPPS
Sbjct:   29 GSYIGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPS 175          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.140e-26
Identity = 60/171 (35.09%), Postives = 105/171 (61.40%), Query Frame = 2
Query:  149 QMMLVKWLGSVVFLAIGLFTNV-LGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            ++ LV W    +F++I  F N  + + +G+  G +  N+PS + +  +++   I  VR+YDA+  +LKA + +GIE+++GV N ++L   +       W++ N+  Y P+T IT+I+VG +V  +  NA  +++ AM N+H AL  S L+ ++KIS+ HS+ I+ R FPPS
Sbjct:    4 RLNLVFW----IFVSILAFLNFGMASKIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPS 170          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.246e-23
Identity = 54/145 (37.24%), Postives = 89/145 (61.38%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNAASV-LVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GVN G    N+PS +D++ ++++   T V+LYDA+  +LKA S +GIE I+G L  E L   +       WI +NV  ++P TNIT I +G+++L    ++ +  L+ AM  +H AL+ + L+ Q+ ++T HS+ I+   FPPS
Sbjct:   29 IGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIG-LGNEYLSKMKDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPS 172          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.594e-22
Identity = 54/146 (36.99%), Postives = 85/146 (58.22%), Query Frame = 2
Query:  224 YVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTS-IPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            ++GVN G    N+P  S+ V +L++  I  VRLY AD  ++KAL+ +G+ +++G  N +V  +         WIN NV  + P + I  I VG+++L S  PN  + L+ AM N+ KAL A  L  ++K+ST +SM ++    PPS
Sbjct:   25 FIGVNYGQVADNLPPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPS 170          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.046e-21
Identity = 55/145 (37.93%), Postives = 88/145 (60.69%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNA-ASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +G+N G   +N+P   +++ +L++   T V+LYDAD   L+A + SG E+ V + NE +  + +       W+ +NV AY+P T I AI VG++VLTS  +A  + L  AM ++H ALV   LN Q+ ++T HS+ I+   +PPS
Sbjct:   27 IGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQMSD-PIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPS 170          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.576e-20
Identity = 55/149 (36.91%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  218 GAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIP--NAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            G  VGV  G    ++P+ S +V +++ + I +VR+YD +S +LKA   + IE+++GV N ++    +       W+  +V  Y PTT IT I VG++  T  P  NA+S +V AM N+  AL    L+ ++K+ST  S+ I+ R FPPS
Sbjct:   23 GGKVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAE-STDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPS 170          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_PHAVU (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.670e-19
Identity = 51/146 (34.93%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  227 VGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQVLTSIPNA--ASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            +GV  G   +N+PSA++++ + R+N I  +RLYD +   L+AL  SGIE+I+GV N ++ G+         W+ +NV  + P+  I  IAVG++V     ++  A  ++ A+ N+++A+ A  L+ Q+K+ST   M +I   +PPS
Sbjct:    2 IGVCYGMMGNNLPSANEVINLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYIAVGNEVSPVGGSSWYAQYVLPAVQNVYQAVRAQGLHDQIKVSTAIDMTLIGNSYPPS 147          
BLAST of FC920770 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.858e-19
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 2
Query:  155 MLVKWLGSVVFLAIGLFTNV--LGAYVGVNIGTDVSNMPSASDIVAILRANQITHVRLYDADSHMLKALSKSGIEVIVGVLNEEVLGIGEXXXXXXXWINKNVAAYMPTTNITAIAVGSQV--LTSIPNAASVLVSAMNNLHKALVASDLNFQVKISTPHSMDIIPRPFPPS 658
            M    +  +V L + + TN+    A +GV  G   +N+PS S+++ + ++  I  +RLYD +   L AL  S IEVI+G+ N +V  I         W+ KNV  + P   I  IAVG+++  +T   N A   V A+ N++KA+  + L   +K+ST   M +I   +PPS
Sbjct:    1 MATSQIAIIVLLGLLVATNIHITEAQIGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPS 172          
The following BLAST results are available for this feature:
BLAST of FC920770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
E134_ARATH1.107e-5560.36Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E133_ARATH3.236e-3954.86Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_ARATH7.209e-3951.02Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E1312_ARATH9.140e-2635.09Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1311_ARATH4.246e-2337.24Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E137_ARATH3.594e-2236.99Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E1310_ARATH1.046e-2137.93Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E1313_ARATH2.576e-2036.91Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13B_PHAVU1.670e-1934.93Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_SOLLC4.858e-1933.14Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]

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Properties
Property NameValue
Genbank descriptionC32012G12EF RVDevelop1 Citrus clementina cDNA clone C32012G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920770 ID=FC920770; Name=FC920770; organism=Citrus clementina; type=EST; length=694bp
GGAGCTCAGGCAATTTGGATCTCGCAGGACCTTGCAGTCAGCTATTGGCA
TCAAATTCCATTTTTGTGTGTTTCTGGAAGCTTTGGCAGTCTGATCTCCA
TCTTGGAGTAATTGACTGGACTGAAGGTGTAGGTTAAAGTTTGTTGGACA
GATGATGCTTGTAAAATGGCTTGGAAGTGTGGTTTTTCTTGCAATTGGCC
TCTTTACCAACGTGTTAGGTGCATATGTTGGTGTAAACATCGGAACAGAT
GTTTCCAACATGCCATCAGCTTCAGATATTGTTGCAATACTTAGAGCCAA
TCAAATTACTCACGTACGCCTTTATGACGCTGACAGTCACATGCTGAAAG
CCCTTTCAAAGAGTGGAATTGAGGTAATTGTTGGTGTACTGAATGAGGAA
GTCTTGGGTATTGGAGAATCTGCATCAGCTGCAGCAGCCTGGATTAATAA
AAATGTTGCTGCGTACATGCCTACAACTAATATTACAGCCATTGCGGTTG
GCAGTCAGGTTCTTACCTCAATCCCTAATGCTGCCTCAGTTTTGGTGTCG
GCCATGAATAACCTTCATAAAGCTCTAGTTGCTTCAGATCTAAATTTCCA
AGTCAAAATTTCAACTCCACACTCCATGGATATAATCCCAAGGCCATTCC
CCCCTTCACCGCTACATTTAATCTGCATGGAACTCTACATTTAT
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