FC920776

Overview
NameFC920776
Unique NameFC920776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig597 contig Ccv1_Contig597:358..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920776 vs. ExPASy Swiss-Prot
Match: BI1L_ARATH (BI1-like protein OS=Arabidopsis thaliana GN=At4g15470 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 8.401e-76
Identity = 152/242 (62.81%), Postives = 172/242 (71.07%), Query Frame = 3
Query:   39 KMLGYETVR----SKDDGKFEVDLEGGDGER-LYPGLSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDKLDQRFTYDDYILASVTLYLDILNL 749
            K  GY +V      +  GK ++DLE G GE  LYPGLSYGENQLRWGFIRKVYGIL+AQ++LTTL+S++ VL  P+ND                       H+YHQKHPVNLI+L LFTVSLS  V VSCA T+GRIVL+ALILT +VV SLT YTFWA+KKGKDFSFLGP              +QMFFPLG TS AVYGG SALVFCGYIVYDTD L +RFTYD+YILASV LYLDILNL
Sbjct:    3 KPYGYASVSMSGIDRSAGK-DIDLEMGVGEATLYPGLSYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPGILLFLCIVPFILIWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGKDFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLIKRFTYDEYILASVALYLDILNL 243          
BLAST of FC920776 vs. ExPASy Swiss-Prot
Match: TMBI4_MOUSE (Transmembrane BAX inhibitor motif-containing protein 4 OS=Mus musculus GN=Tmbim4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.273e-23
Identity = 63/199 (31.66%), Postives = 103/199 (51.76%), Query Frame = 3
Query:  153 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDKLDQRFTYDDYILASVTLYLDILNL 749
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          ++   HP+NL +L  FT+S SL VA      D  +VL+A I+T+AV   LT YT  + +   DF+  G               +++FF    T   V   + AL+FCG+I+YDT  L  R + ++Y++A+++LY+DI+NL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSALFLYFQALRTFVHESPALIVVFALGSLGLIFALTLHRHTHPLNLYLLFAFTLSESLAVAAVVTFYDVYLVLQAFIMTTAVFLGLTAYTLQSKR---DFTKFGAGLFAGLWILCLAGFLKLFF-YSETMELVLASLGALLFCGFIIYDTHSLMHRLSPEEYVIAAISLYMDIINL 224          
BLAST of FC920776 vs. ExPASy Swiss-Prot
Match: TMBI4_HUMAN (Transmembrane BAX inhibitor motif-containing protein 4 OS=Homo sapiens GN=TMBIM4 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.032e-21
Identity = 64/199 (32.16%), Postives = 99/199 (49.75%), Query Frame = 3
Query:  153 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDKLDQRFTYDDYILASVTLYLDILNL 749
            +R  F+RKVY IL+ Q++LTT+ S++ + +  +                          +   K+P+NL +L  FT+  +L VAV     D  I+L+A ILT+ V   LT YT  + K   DFS  G               ++ FF        V     AL+FCG+I+YDT  L  + + ++Y+LA+++LYLDI+NL
Sbjct:   30 IRMAFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLGLIFALTLNRHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVYTLQSKK---DFSKFGAGLFALLWILCLSGFLKFFF-YSEIMELVLAAAGALLFCGFIIYDTHSLMHKLSPEEYVLAAISLYLDIINL 224          
BLAST of FC920776 vs. ExPASy Swiss-Prot
Match: YQE4_SCHPO (Uncharacterized membrane protein C576.04 OS=Schizosaccharomyces pombe GN=SPCC576.04 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 60/199 (30.15%), Postives = 91/199 (45.73%), Query Frame = 3
Query:  153 LRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDKLDQRFTYDDYILASVTLYLDILNL 749
            +R  F+RKVY ILTAQ+ +T+L   I  L+   +                         +    +P N I L LFT    L +  +      RI+LEA+ +T  V  +LT +TF +     DFS LG               +  F P        + G   LVFCGYI++DT  +  R++ +++I++S+ LYLD +NL
Sbjct:   54 IRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQSKW---DFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNILHRYSPEEFIMSSLMLYLDFINL 249          
BLAST of FC920776 vs. ExPASy Swiss-Prot
Match: TMBI4_CAEEL (Transmembrane BAX inhibitor motif-containing protein 4 OS=Caenorhabditis elegans GN=tmbi-4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 60/215 (27.91%), Postives = 93/215 (43.26%), Query Frame = 3
Query:  108 DGERLYPG-LSYGENQLRWGFIRKVYGILTAQIVLTTLVSSITVLYNPINDXXXXXXXXXXXXXXXXXXXXXXXHVYHQKHPVNLIVLGLFTVSLSLPVAVSCANTDGRIVLEALILTSAVVCSLTGYTFWASKKGKDFSFLGPXXXXXXXXXXXXXXMQMFFPLGSTSTAVYGGISALVFCGYIVYDTDKLDQRFTYDDYILASVTLYLDILNL 749
            D + + PG +      +R  F+RKV GI+  Q++ T  + +        N                        HVY ++ P+N ++L  FT   ++ +       + ++VLEA ++T  VV SL  YT    +  +DFS                   QMFF +      V     A +FC  +V D D +  RF+ +DYI A V+LY+DILNL
Sbjct:   53 DADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAAIYNIPNSNQLLQKHAWIVFPNLLGSIALIIALHVYAREVPLNYVLLAAFTAVQAVTMGCVVTLFEAKVVLEAAVITGLVVASLFAYTL---QNKRDFSVGYASMGSLLCVLLWAGIFQMFF-MSPAVNFVINVFGAGLFCVLLVIDLDMIMYRFSPEDYICACVSLYMDILNL 263          
The following BLAST results are available for this feature:
BLAST of FC920776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BI1L_ARATH8.401e-7662.81BI1-like protein OS=Arabidopsis thaliana GN=At4g15... [more]
TMBI4_MOUSE1.273e-2331.66Transmembrane BAX inhibitor motif-containing prote... [more]
TMBI4_HUMAN2.032e-2132.16Transmembrane BAX inhibitor motif-containing prote... [more]
YQE4_SCHPO6.119e-1830.15Uncharacterized membrane protein C576.04 OS=Schizo... [more]
TMBI4_CAEEL8.270e-1527.91Transmembrane BAX inhibitor motif-containing prote... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32012H06EF RVDevelop1 Citrus clementina cDNA clone C32012H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920776 ID=FC920776; Name=FC920776; organism=Citrus clementina; type=EST; length=751bp
AAAAAAATCACGAAAATCCAAAAATCAAAATCGCTTGAAAGATGTTGGGC
TACGAGACGGTGAGGAGCAAAGATGACGGCAAATTCGAGGTAGATCTGGA
AGGCGGAGATGGGGAGAGGCTTTACCCCGGTCTCAGCTACGGCGAGAACC
AGCTCCGATGGGGTTTCATTCGCAAGGTGTACGGCATCTTGACGGCCCAG
ATCGTTTTGACCACCTTGGTCTCCTCAATCACCGTTCTTTACAATCCCAT
CAACGATCTTCTCAGGGGCAATTCTGGCCTTCTCCTCTTCCTCTCCATCC
TCCCCTTCATCCTGTTATGGCCACTGCATGTGTATCATCAGAAGCACCCT
GTGAACTTGATTGTCCTTGGTCTCTTCACTGTATCTCTGAGTCTTCCTGT
TGCTGTAAGCTGTGCTAATACCGATGGTAGGATTGTGCTTGAAGCATTAA
TTCTGACCTCGGCTGTGGTTTGTTCTTTAACTGGGTACACTTTCTGGGCC
TCTAAGAAGGGCAAAGACTTCAGCTTTCTTGGACCAATTCTATTCACCAG
CCTCATAATCCTCATTCTGACTAGCTTTATGCAGATGTTCTTTCCTCTGG
GATCTACATCCACTGCTGTTTATGGTGGAATTAGTGCACTGGTCTTCTGT
GGATACATCGTTTACGACACCGACAAACTTGATCAGCGCTTCACATATGA
TGATTATATCTTGGCCTCTGTCACTCTCTATCTGGATATTCTGAACCTTT
T
back to top