FC920779

Overview
NameFC920779
Unique NameFC920779
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:31..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920779 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.011e-33
Identity = 64/148 (43.24%), Postives = 94/148 (63.51%), Query Frame = 3
Query:  219 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGF 662
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E  R+VT  NL +AGF
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNAGF 188          
BLAST of FC920779 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 68/160 (42.50%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  213 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFTLGESSSSRD 692
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG+   E    +D
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKD 195          
BLAST of FC920779 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.896e-32
Identity = 68/160 (42.50%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  213 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFTLGESSSSRD 692
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KI+FL+GR  D++ VTEANLK AG+   E    +D
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKAGYHTWEKLILKD 192          
BLAST of FC920779 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 70/171 (40.94%), Postives = 101/171 (59.06%), Query Frame = 3
Query:  192 GSRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFTLGESSSSRD-HLI 701
            G R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN G A                G KIVFL+GR  D+  VTEANLK AGF   E    +D HLI
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKAGFHTWEQLILKDPHLI 200          
BLAST of FC920779 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 3
Query:  222 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFT 665
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+ TG                   GI+ + L+ R +  +NVT  NL+ AG T
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAAGVT 200          
BLAST of FC920779 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  222 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVNTGKA-XXXXXXXXXXXXXXXXGIKIVFLTGRPEDQRNVTEANLKHAGFT 665
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+ +G++                 GI+ + ++ R +    VT  NLK  G T
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLELGIEPIIISDRWKKLSEVTVENLKAVGVT 205          
The following BLAST results are available for this feature:
BLAST of FC920779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC6.011e-3343.24Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN3.896e-3242.50Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN3.896e-3242.50Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN8.982e-2940.94Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH2.990e-2438.67Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH3.655e-2236.00Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC32012H10EF RVDevelop1 Citrus clementina cDNA clone C32012H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920779 ID=FC920779; Name=FC920779; organism=Citrus clementina; type=EST; length=702bp
ATATTACGGTTCTAATGAGCATGGGAGGGGTGTCACTGCCATTATTATTC
TTTTTTCTGGCTACCATATCAGCAACATCCCATGGATTTAGCATGGACAT
CCGCCATCTTTTTCTGGCTACCATACCAGCAACATCCCATGGATTTAGCA
TGGACATCCCCCATCAGATTCATCTTCTCCGACCGAAAGCCGGTTCCCGG
AACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCGACTCGGAGTGGA
AACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGACT
ACGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTGGACTCTGAAGTG
GTTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCACGCTTGCTGGCGA
CGGCAAGGACATTTGGGTTTTCGACATAGATGAAACCTCGCTATGTAATT
TGCCATATTATGCTAAGAATGGATTCGGGGTGAAGCCGTACAACCCTACT
ATGTTTAATGAATGGGTTAACACCGGAAAAGCACCACCGCTGCCAGAGAG
CCTTAAGCTTTACAAAAAATTATTATTGCTTGGAATTAAGATTGTATTCC
TCACGGGAAGACCAGAAGATCAGAGAAATGTTACAGAAGCTAATTTAAAG
CATGCTGGATTCACACTTGGGGAGAGCTCATCCTCAAGGGATCATCTCAT
TC
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