FC920782

Overview
NameFC920782
Unique NameFC920782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920782_ssr172 microsatellite FC920782_ssr172:172..189. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12110 contig Ccv1_Contig12110:39..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.872e-55
Identity = 100/136 (73.53%), Postives = 114/136 (83.82%), Query Frame = 1
Query:  283 SHFPITARPISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            S FP TAR IS +  P  N+  +LGFG RP PDPA++  SAIAQGPDDDVP+PGQQFAQFGAGCFWG ELA+QRVPGVTKTEVGYS G++ NP+YEDVCS TT HNE+VRVQYDPKE SF++LLD+FW RHDP TL
Sbjct:   38 SPFPKTARSISVYKSPMNNLFTRLGFGSRPQPDPAAS--SAIAQGPDDDVPSPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTL 171          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.070e-54
Identity = 100/135 (74.07%), Postives = 113/135 (83.70%), Query Frame = 1
Query:  289 FPITAR-PISTHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            FP T+R PIS +  P  N+ N+LGFG RP    A   ++AIAQGPDDDVP+ GQQFAQFGAGCFWGVELA+QRVPGVTKTEVGYS G +HNPSYEDVC+GTT HNEVVRVQYDPKECSF++LLD+FW RHDP TL
Sbjct:   39 FPQTSRRPISVYKSPMNNLFNRLGFGSRPQAQ-ADPSSAAIAQGPDDDVPSSGQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTL 172          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.363e-52
Identity = 98/142 (69.01%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  283 SHFPITA-RPI-----STHYKPPMNILNKLGFGFRPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            S FP+T+ +P+     S+     M+ L +LG G R +P  AS + S+IAQGPDDD+PAPGQQFAQFGAGCFWGVELAFQRVPGV+KTEVGY+QG+LHNP+Y D+CSGTTNH+EVVRVQYDPK CSFD+LLD FW RHDP TL
Sbjct:   33 SSFPVTSTKPLFTLRHSSSTPKIMSWLGRLGXGTR-TPADASMDQSSIAQGPDDDIPAPGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTL 173          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.962e-32
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1
Query:  388 STENSAIAQGPDDDVP-APGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            ST N A+   PD D P  PG +FAQF AGCFWGVELAFQRV GV KTEVGYSQG +H+P+Y+ +CSGTT H E +R+Q+DP  C +  LL +FW+RHDP TL
Sbjct:   10 STTNPAL--DPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTL 109          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.885e-31
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1
Query:  385 ASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            +ST N+       D    PG + AQF +GCFWG EL FQRV GV KTEVGYSQG++H+P+Y  VCSGTTNH+EVVRVQ+DP+ C +  LL +FW+RHDP TL
Sbjct:    3 SSTTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTL 104          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.223e-23
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            A FGAGCFWGVE AF++V GV  T VGY  G+L NP+YEDVC+G T H EVV V +DP    +  LLD+FW+ HDP TL
Sbjct:   10 ATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTL 88          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_SALAI (Peptide methionine sulfoxide reductase msrA OS=Salinispora arenicola (strain CNS-205) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  442 GQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            G Q A FG GCFWG E  F  +PGV  T VGY+ GY  NPSYE+VCSG T H EVV+V+YDP + +++ LL +FW  HDP
Sbjct:   44 GTQVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYEEVCSGRTGHAEVVQVRYDPTKIAYEDLLKVFWENHDP 123          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  433 PAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPT 687
            P    + A FGAGCFWGVE AF+RVPGV +T VG+  G + NP+Y +VC+G T H EVV+V YDP   S+  LLD FW  HDP T
Sbjct:    3 PEKSLERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTT 87          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  367 RPSPDPASTENSAIAQGPDDDVPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDP 681
            R  P P + ++           PAP QQ A FG GCFWG E  F + PGV  T VGY+ G+  NP+YE+VCSG T H EVV V +DP++ SFD LL +FW  H+P
Sbjct:   24 RAEPLPVAQQHHVNGNPIKPPFPAPMQQ-AVFGLGCFWGAERRFWQQPGVFSTAVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDPQQTSFDALLKVFWEAHNP 127          
BLAST of FC920782 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  454 AQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPPTL 690
            A F AGCFW VEL FQRV GVTKT VGY+ G + NP+Y  VCSG T   E V ++YDP++ +++ LL +FW++HDP TL
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTL 82          
The following BLAST results are available for this feature:
BLAST of FC920782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 270
Match NameE-valueIdentityDescription
MSRA_BRANA1.872e-5573.53Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH2.070e-5474.07Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_LACSA7.363e-5269.01Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_SOLLC4.962e-3262.75Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN1.885e-3159.80Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_METTH3.223e-2360.76Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SALAI1.600e-2257.50Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_METMJ1.600e-2256.47Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_PSEMY2.089e-2248.57Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_DICDI2.729e-2256.96Peptide methionine sulfoxide reductase OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionC32013A03EF RVDevelop1 Citrus clementina cDNA clone C32013A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920782 ID=FC920782; Name=FC920782; organism=Citrus clementina; type=EST; length=691bp
TTGGAAAAATGGTCAGAGAATGAGGGAGTAATAATATTTTAATTTAAAGT
AGCTTGAAAAAAAATTCAATCTAACCTCGATTGAGCAAATCGACACGAGG
TAACTGAATTTTCTCAACACGTCTCCAAATCTTTAAAACCAGCAATGGTC
TTAAACAAGTGTCTTTCCATAACCACCACCACCACCACCGTCGCCGCTAC
CATCTCCAAATCGCCACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAA
AGAACCCTCTTTCTCTCTCTAAACCCAATTTTTCCCATTTCCCTATCACT
GCCCGACCCATTTCCACCCACTACAAGCCCCCCATGAACATCCTCAACAA
GCTCGGCTTCGGCTTCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACT
CCGCCATCGCTCAGGGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAG
TTTGCCCAGTTCGGCGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCA
GAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACT
TGCATAACCCTAGCTACGAGGACGTGTGCAGTGGGACTACCAATCATAAT
GAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTT
GCTTGATATGTTTTGGGCTCGCCATGATCCTCCCACGCTTA
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