FC920786

Overview
NameFC920786
Unique NameFC920786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length446
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13179 contig Ccv1_Contig13179:268..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.709e-57
Identity = 92/125 (73.60%), Postives = 99/125 (79.20%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEF+A            IGYK+QTD       CGGVGILGIAWAFGGMIF+LVYCTAGISGGHINPAVT GLFL RKVSL+  +LY+VAQCLGAICGCGFVKAFQ SYY RYGGGANELADGY +
Sbjct:   43 AEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNK 167          

HSP 2 Score: 50.8322 bits (120), Expect = 1.709e-57
Identity = 24/25 (96.00%), Postives = 25/25 (100.00%), Query Frame = 2
Query:  371 HKGTGLGAEIIGTFVLVYTVFSATD 445
            +KGTGLGAEIIGTFVLVYTVFSATD
Sbjct:  166 NKGTGLGAEIIGTFVLVYTVFSATD 190          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 2.024e-55
Identity = 94/123 (76.42%), Postives = 98/123 (79.67%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGY 371
            AEF+A            IGYK Q+D       CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSLI A+LYMVAQCLGAICG GFVKAFQ SYY+RYGGGAN LADGY
Sbjct:   41 AEFVATLLFLYITVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGY 163          

HSP 2 Score: 46.2098 bits (108), Expect = 2.024e-55
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            GTGL AEIIGTFVLVYTVFSATD
Sbjct:  166 GTGLAAEIIGTFVLVYTVFSATD 188          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.439e-55
Identity = 92/127 (72.44%), Postives = 100/127 (78.74%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            IGYK Q+D  +NT    C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSLI A+LY++AQCLGAICG G VK FQ SYY RYGGGANEL+DGY++
Sbjct:   45 AEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSK 171          

HSP 2 Score: 50.447 bits (119), Expect = 3.439e-55
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KGTGLGAEIIGTFVLVYTVFSATD
Sbjct:  171 KGTGLGAEIIGTFVLVYTVFSATD 194          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.620e-55
Identity = 91/124 (73.39%), Postives = 100/124 (80.65%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYT 374
            AEFIA            IGYKSQTDP LN DQC GVG+LGIAWAFGGMIFILVYCTAGISGGHINPAVTFGL L RKV+L+ A++YMVAQCLGAICG   VKAFQ +Y+ RYGGGAN L+DGY+
Sbjct:   42 AEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVTLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYS 165          

HSP 2 Score: 45.0542 bits (105), Expect = 7.620e-55
Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            GTG+ AEIIGTFVLVYTVFSATD
Sbjct:  167 GTGVAAEIIGTFVLVYTVFSATD 189          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 1.688e-54
Identity = 92/124 (74.19%), Postives = 98/124 (79.03%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYT 374
            AEF+A            IGYK Q+D +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL  ALLY++AQCLGAICG GFVKAFQ SYY RYGGGAN LADGY+
Sbjct:   43 AEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYS 166          

HSP 2 Score: 46.2098 bits (108), Expect = 1.688e-54
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            GTGL AEIIGTFVLVYTVFSATD
Sbjct:  168 GTGLAAEIIGTFVLVYTVFSATD 190          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 6.355e-54
Identity = 90/127 (70.87%), Postives = 100/127 (78.74%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            IGYK QTD + +     CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFL RKVSL+ ALLY+VAQCLGAICG G VKAFQ +Y++RYGGGAN LA GY+R
Sbjct:   46 AEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSR 172          

HSP 2 Score: 49.2914 bits (116), Expect = 6.355e-54
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            +GTGLGAEIIGTFVLVYTVFSATD
Sbjct:  172 RGTGLGAEIIGTFVLVYTVFSATD 195          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.355e-54
Identity = 91/127 (71.65%), Postives = 100/127 (78.74%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            IGYK QTD + +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL+ ALLY++AQCLGAICG G VK FQ +YY RYGGGANEL+DGY++
Sbjct:   45 AEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSK 171          

HSP 2 Score: 48.1358 bits (113), Expect = 6.355e-54
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KGTGL AEIIGTFVLVYTVFSATD
Sbjct:  171 KGTGLAAEIIGTFVLVYTVFSATD 194          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.408e-53
Identity = 91/127 (71.65%), Postives = 99/127 (77.95%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            IGYK QTD   +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSL+ ALLY++AQCLGAICG G VK FQ +YY RYGGGANEL+DGY++
Sbjct:   46 AEFIATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSK 172          

HSP 2 Score: 48.1358 bits (113), Expect = 1.408e-53
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 2
Query:  374 KGTGLGAEIIGTFVLVYTVFSATD 445
            KGTGL AEIIGTFVLVYTVFSATD
Sbjct:  172 KGTGLAAEIIGTFVLVYTVFSATD 195          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.408e-53
Identity = 88/126 (69.84%), Postives = 97/126 (76.98%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNL-NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYTR 377
            AEFIA            IGYK Q+D  +    +C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSL+ ALLYM+AQC GAICG G  K FQKS+YNRYGGG N ++DGY +
Sbjct:   44 AEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNK 169          

HSP 2 Score: 48.521 bits (114), Expect = 1.408e-53
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = 2
Query:  371 HKGTGLGAEIIGTFVLVYTVFSATD 445
            +KGT LGAEIIGTFVLVYTVFSATD
Sbjct:  168 NKGTALGAEIIGTFVLVYTVFSATD 192          
BLAST of FC920786 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.836e-53
Identity = 92/123 (74.80%), Postives = 96/123 (78.05%), Query Frame = 3
Query:    3 AEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLILALLYMVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGY 371
            AEF+A            IGYK Q+D       CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFL RKVSLI A+LYMVAQCLGAICG GFVKAFQ S+Y  YGGGAN LADGY
Sbjct:   41 AEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGY 163          

HSP 2 Score: 46.2098 bits (108), Expect = 1.836e-53
Identity = 22/23 (95.65%), Postives = 22/23 (95.65%), Query Frame = 2
Query:  377 GTGLGAEIIGTFVLVYTVFSATD 445
            GTGL AEIIGTFVLVYTVFSATD
Sbjct:  166 GTGLAAEIIGTFVLVYTVFSATD 188          
The following BLAST results are available for this feature:
BLAST of FC920786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PIP24_ARATH1.709e-5773.60Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH2.024e-5576.42Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP22_ORYSJ3.439e-5572.44Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP25_ARATH7.620e-5573.39Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP21_ARATH1.688e-5474.19Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP21_MAIZE6.355e-5470.87Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP24_MAIZE6.355e-5471.65Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE1.408e-5371.65Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP27_MAIZE1.408e-5369.84Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP23_ARATH1.836e-5374.80Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionC32013A07EF RVDevelop1 Citrus clementina cDNA clone C32013A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920786 ID=FC920786; Name=FC920786; organism=Citrus clementina; type=EST; length=446bp
TTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTTGACT
GTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATCAGTG
TGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATGATCT
TCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAACCCG
GCTGTGACATTCGGACTGTTCTTGGGGCGCAAGGTGTCGCTCATCCTAGC
TCTTTTGTACATGGTAGCACAGTGCTTGGGTGCAATCTGTGGTTGTGGGT
TTGTGAAGGCTTTCCAAAAATCATACTACAACAGGTATGGAGGTGGGGCC
AATGAGCTAGCTGATGGATACACAAGGGCACCGGACTGGGTGCTGAGATC
ATCGGTACTTTCGTTCTTGTCTACACTGTTTTCTCTGCCACTGATC
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