FC920789

Overview
NameFC920789
Unique NameFC920789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920789_ssr157 microsatellite FC920789_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14196 contig Ccv1_Contig14196:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.229e-70
Identity = 139/213 (65.26%), Postives = 162/213 (76.06%), Query Frame = 1
Query:   79 MAFKHLLTLARRSHR-------PSSTALFTAIRXXXXXXXXXXXXXXXXXXXXXXNVMIYDRLAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNSTFD 696
            MA K+LL+LARRS R         S++ F+AI                       ++M YD  AE +K K+K LENPD +FLKY SPHP L SH HIL+APET++TTLPNGLRVATESNL+AKTATVGVWIDAGSRFE+DETNGTAHFLEHMIFKGT++RT R LEEEIE++GGHLNAYTSREQTTYYAKVL+ +VN ALD+LADILQNS F+
Sbjct:    1 MAMKNLLSLARRSQRRLFLTQATRSSSSFSAI------DSVPASASPTALSPPPPHLMPYDHAAEIIKNKIKKLENPDKRFLKYASPHPILASHNHILSAPETRVTTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRALEEEIEDIGGHLNAYTSREQTTYYAKVLDSNVNQALDVLADILQNSKFE 207          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_BLAEM (Mitochondrial-processing peptidase subunit beta OS=Blastocladiella emersonii GN=MPP1 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.270e-39
Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  346 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNSTFD 696
            +L  P+T++T LPNGL VATESN A  TATVGVWID+GSR ET   NG AHFLEH+ FKGT++RT   LE EIENMGGHLNAYTSREQT YYAK+   DV   ++IL DILQNST D
Sbjct:   29 LLNVPKTQVTRLPNGLTVATESNPALATATVGVWIDSGSRAETKANNGVAHFLEHISFKGTKQRTQSGLEIEIENMGGHLNAYTSREQTVYYAKLFSQDVAKGVNILGDILQNSTLD 145          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1
Query:  346 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNST 690
            +L  PET++T L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK    D+  A++ILADI+QNST
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGISTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 165          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 77/115 (66.96%), Postives = 91/115 (79.13%), Query Frame = 1
Query:  346 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNST 690
            +L  PET++T L NGLRVA+E N    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK    D+  A++ILADI+QNST
Sbjct:   52 VLNVPETQVTCLENGLRVASE-NSGLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSRDLPRAVEILADIIQNST 165          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.791e-37
Identity = 88/151 (58.28%), Postives = 106/151 (70.20%), Query Frame = 1
Query:  244 LAEAVKAKLKNLENPDPKFLKYGSPHPTLTSHTHILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNSTFD 696
            LA+ VKA+   + NP  + L   +PH    S T I    +T+ TTL NGL VA++ +  A+T+TVG+WIDAGSR ETDETNGTAHFLEH+ FKGT KRT + LE EIENMG HLNAYTSRE T Y+AK L  DV   +DIL DILQNS  +
Sbjct:   10 LAQGVKARAGGVINPFRRGL--ATPH----SGTGI----KTQTTTLKNGLTVASQYSPYAQTSTVGMWIDAGSRAETDETNGTAHFLEHLAFKGTTKRTQQQLELEIENMGAHLNAYTSRENTVYFAKALNEDVPKCVDILQDILQNSKLE 150          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.339e-37
Identity = 77/115 (66.96%), Postives = 92/115 (80.00%), Query Frame = 1
Query:  346 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNST 690
            +L  PET++T L NGLRVA+E +  A T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK    D+  A++ILADI+QNST
Sbjct:   53 VLNVPETRVTCLENGLRVASEDSGLA-TCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 166          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.210e-37
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 1
Query:  358 PETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNSTFD 696
            P T+I+TL NGL VATES   A+TATVGVWIDAGSR ETD+TNGTAHFLEHM FKGT +R+   LE E+EN+G HLNAYTSREQT YYAK    DV  A+DI++DILQNS  +
Sbjct:   27 PFTEISTLSNGLTVATESQPHAQTATVGVWIDAGSRAETDKTNGTAHFLEHMAFKGTGRRSQHALELEVENIGAHLNAYTSREQTVYYAKSFSKDVPVAVDIISDILQNSKLE 139          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1
Query:  346 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNST 690
            +L  PET++T L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK    D+  A++ILADI+QNST
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 165          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.887e-37
Identity = 75/115 (65.22%), Postives = 91/115 (79.13%), Query Frame = 1
Query:  346 ILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNST 690
            +L  PET++T L +GLRVA+E +    T TVG+WIDAGSR+E ++ NGTAHFLEHM FKGT+KR+  DLE EIENMG HLNAYTSREQT YYAK    D+  A++ILADI+QNST
Sbjct:   52 VLNVPETRVTCLESGLRVASEDS-GLSTCTVGLWIDAGSRYENEKNNGTAHFLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADIIQNST 165          
BLAST of FC920789 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.411e-36
Identity = 76/120 (63.33%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  340 THILAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKR-TARDLEEEIENMGGHLNAYTSREQTTYYAKVLE*DVNNALDILADILQNSTFD 696
            +++  +PETKITTL NG+RVATE     + A+VGVW+D+GS +ETD+ NG AHFLEHMIFKGT KR T + +E EIENMGG LNA+TSRE + YY KVL+ +V NA+DIL+DILQNS F+
Sbjct:   27 SYLKISPETKITTLSNGIRVATEQTYG-EVASVGVWVDSGSVYETDKNNGVAHFLEHMIFKGTAKRPTPQSIETEIENMGGSLNAFTSREHSAYYMKVLKDNVPNAVDILSDILQNSKFE 145          
The following BLAST results are available for this feature:
BLAST of FC920789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
MPPB_ARATH1.229e-7065.26Probable mitochondrial-processing peptidase subuni... [more]
MPPB_BLAEM7.270e-3968.38Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT1.371e-3766.96Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE1.371e-3766.96Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR1.791e-3758.28Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_BOVIN2.339e-3766.96Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED5.210e-3769.03Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB8.887e-3765.22Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN8.887e-3765.22Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI4.411e-3663.33Mitochondrial-processing peptidase subunit beta OS... [more]

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Properties
Property NameValue
Genbank descriptionC32013A10EF RVDevelop1 Citrus clementina cDNA clone C32013A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920789 ID=FC920789; Name=FC920789; organism=Citrus clementina; type=EST; length=698bp
CCTGGCCGGGGGAACCATAGCAATCTCGACTCTAGAGTGAAAAGGAAACT
CGAGACATATCATCAGTGAGTCCAAACGATGGCGTTTAAGCATCTTTTAA
CCCTAGCTCGCCGGTCTCACAGGCCTTCGTCCACGGCCCTCTTTACCGCC
ATCCGATCCTCCTCCTCCGCCTCACCCCTCGCCACGTCACCATCGTCTCC
GCCGCCGTCCCCGCCTCCCCCAAATGTCATGATCTACGACCGTCTCGCCG
AAGCCGTCAAAGCCAAGCTCAAAAACCTAGAAAACCCCGACCCGAAGTTC
TTAAAGTACGGATCCCCGCACCCGACCCTTACTTCCCACACGCACATCCT
CGCCGCGCCGGAGACCAAAATCACGACTTTGCCTAACGGACTCCGCGTCG
CCACCGAGTCGAACCTCGCCGCGAAGACGGCCACAGTTGGAGTTTGGATT
GACGCCGGCTCGAGGTTCGAGACTGATGAGACGAACGGGACGGCTCATTT
CTTGGAGCATATGATATTCAAGGGGACGGAGAAGCGGACTGCGAGAGATT
TGGAGGAGGAGATCGAGAATATGGGGGGGCATTTGAATGCTTACACTAGC
AGGGAACAGACGACCTATTATGCCAAGGTGTTGGAATAGGATGTGAATAA
TGCTTTGGATATTTTGGCTGATATTTTGCAGAACTCGACGTTTGATCA
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