FC920792

Overview
NameFC920792
Unique NameFC920792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920792_ssr369 microsatellite FC920792_ssr369:369..383. BLAST: Citrus ESTs to Prunus persica proteins V1
FC920792_ssr167 microsatellite FC920792_ssr167:167..178. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14198 contig Ccv1_Contig14198:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920792 vs. ExPASy Swiss-Prot
Match: GUN25_ARATH (Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 6.163e-65
Identity = 119/158 (75.32%), Postives = 129/158 (81.65%), Query Frame = 3
Query:  210 MFGRDPWGGPLEINXXXXXXXXXXXXNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASSSISRIWLG 683
            M+GRDPWGGPLEIN            NL D DRAALSRPLDETQQSWLLGPTE+KKKKYVDLGCIIVSRKIFVWTVGTL+ +ALLAGFITLIVKTVPRHH     PDNYT+ALHKAL FFNAQ+SGKLPKHNNVSWRGNS L+DGK  + S  +  +G
Sbjct:    1 MYGRDPWGGPLEINTADSATDDDRSRNLNDLDRAALSRPLDETQQSWLLGPTEQKKKKYVDLGCIIVSRKIFVWTVGTLVAAALLAGFITLIVKTVPRHHPKTPPPDNYTIALHKALKFFNAQKSGKLPKHNNVSWRGNSGLQDGKGETGSFYKDLVG 158          

HSP 2 Score: 24.2534 bits (51), Expect = 6.163e-65
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  682 GFYDAGDAIK 711
            G+YDAGDAIK
Sbjct:  159 GYYDAGDAIK 168          
BLAST of FC920792 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 7.801e-56
Identity = 104/147 (70.75%), Postives = 118/147 (80.27%), Query Frame = 3
Query:  210 MFGRDPWGGPLEINXXXXXXXXXXXXNLQDFDRAALSRPLDETQQSWLLGPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKH-NNVSWRGNSCLKDGK 647
            M+GRDPWGGPLEIN            NLQD DRA  SRPLDETQQSWLLGP   KKKKYVDLGCI+VSRKIF+WT+GT++V+ALL+GFITLIVKT+P HHH    PDNYT+AL  AL FFNAQ+SGKLPK+  NVSWR +SCL+DGK
Sbjct:    1 MYGRDPWGGPLEINAADSMTDDDRSRNLQDLDRATPSRPLDETQQSWLLGPKVLKKKKYVDLGCILVSRKIFLWTLGTIVVTALLSGFITLIVKTLPHHHHKEPPPDNYTIALRTALKFFNAQQSGKLPKNIYNVSWRHDSCLQDGK 147          

HSP 2 Score: 23.0978 bits (48), Expect = 7.801e-56
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  682 GFYDAGDAIK 711
            G+YDAGD+IK
Sbjct:  160 GYYDAGDSIK 169          
BLAST of FC920792 vs. ExPASy Swiss-Prot
Match: GUN9_ORYSJ (Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 5.804e-50
Identity = 98/152 (64.47%), Postives = 113/152 (74.34%), Query Frame = 3
Query:  204 MSMFGRDPWGGPLEINXXXXXXXXXXXXNLQDFDRAALSRPLDETQQSWLL---GPTEKKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKS 650
            MSM+GRDPWGGPLEI             NL D DR ALSR LDETQQSWLL   G   +KKKKYVDLGC++VSRK+FVWTVG LL +A+ AG +  I K +PRHH     PD++T+AL KALMFFNAQ+SGKLPK+NNV WRGNSC+KDG S
Sbjct:    1 MSMYGRDPWGGPLEI-CHDSATDDDRSRNL-DLDRGALSRTLDETQQSWLLAGPGDQGRKKKKYVDLGCLVVSRKLFVWTVGVLLAAAVFAGLVAGIAKAIPRHHRPPPPPDDFTVALRKALMFFNAQKSGKLPKNNNVHWRGNSCMKDGLS 150          

HSP 2 Score: 23.8682 bits (50), Expect = 5.804e-50
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  682 GFYDAGDAIK 711
            G+YDAGDA+K
Sbjct:  161 GYYDAGDAVK 170          
BLAST of FC920792 vs. ExPASy Swiss-Prot
Match: GUN10_ORYSJ (Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.089e-48
Identity = 97/154 (62.99%), Postives = 109/154 (70.78%), Query Frame = 3
Query:  210 MFGRDPWGGPLEINXXXXXXXXXXXXNLQDFDRAALSRPLDETQQSWLL-GPTE---KKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDGKSASS 659
            MFGRDPWGGPLEI+              +D DR AL R LDETQQSWLL GP +   KKKKKYVDLGC+++ RKIF+WTVGT+L   L  GF+ +IVK VP        PD YT ALHKALMFFNAQRSG LPKHN VSWRGNSC+KDG S S+
Sbjct:    1 MFGRDPWGGPLEISNADSATDDDRS---RDLDRGALMRQLDETQQSWLLAGPGDQAGKKKKKYVDLGCMVLDRKIFMWTVGTILGVGLFIGFVMMIVKLVPHKRPPPPPPDQYTQALHKALMFFNAQRSGPLPKHNGVSWRGNSCMKDGLSDST 151          

HSP 2 Score: 25.409 bits (54), Expect = 3.089e-48
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  682 GFYDAGDAIK 711
            GFYDAGDAIK
Sbjct:  159 GFYDAGDAIK 168          
BLAST of FC920792 vs. ExPASy Swiss-Prot
Match: GUN12_ORYSJ (Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.488e-34
Identity = 76/149 (51.01%), Postives = 93/149 (62.42%), Query Frame = 3
Query:  210 MFGRDPWGGPLEINXXXXXXXXXXXXNLQDFDRAALS---RPLDETQQSWLLGPTEKKKK-KYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDG 644
            M+  + WGG  EI                D DR ALS     LDETQQSWLLGP E KKK KYVDLGC++V RK+  W + TLL + +L G   +I K++P+       PD YT ALHKAL+FFNAQ+SG+LPK+N + WRGNS L DG
Sbjct:    1 MYSANHWGGSFEIAADGAAEDDHSRN--MDLDRGALSARQHQLDETQQSWLLGPPEAKKKDKYVDLGCVVVKRKLLWWVLWTLLAAFILIGLPVIIAKSIPKKKPHAPPPDQYTDALHKALLFFNAQKSGRLPKNNGIKWRGNSGLSDG 147          

HSP 2 Score: 21.9422 bits (45), Expect = 2.488e-34
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  682 GFYDAGDAIK 711
            G+YDAGD IK
Sbjct:  160 GYYDAGDNIK 169          
BLAST of FC920792 vs. ExPASy Swiss-Prot
Match: GUN7_ARATH (Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.353e-34
Identity = 76/147 (51.70%), Postives = 96/147 (65.31%), Query Frame = 3
Query:  228 WGGPLEI--NXXXXXXXXXXXXNLQDFDRAALSRP---LDETQQSWLLGPTE---KKKKKYVDLGCIIVSRKIFVWTVGTLLVSALLAGFITLIVKTVPRHHHSHARPDNYTLALHKALMFFNAQRSGKLPKHNNVSWRGNSCLKDG 644
            WGG L+   +            N  ++DR A+      LDETQQ WLL P +   KKKKKYV+LGC+ VSR +F+WTVG++ V  L+     +IVK++PRH  +   PDNYTLALHKAL FF+AQ+SGKLPK N VSWRG+S  KDG
Sbjct:    7 WGGSLDAVDSDRIAAEEEERLRNTTEWDRGAIHSQRSELDETQQGWLLAPQDNWRKKKKKYVNLGCVSVSRTVFLWTVGSIAVLFLVVALPIIIVKSLPRHKSAPPPPDNYTLALHKALQFFDAQKSGKLPKKNKVSWRGDSGTKDG 153          
The following BLAST results are available for this feature:
BLAST of FC920792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
GUN25_ARATH6.163e-6575.32Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE... [more]
GUN21_ARATH7.801e-5670.75Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]
GUN9_ORYSJ5.804e-5064.47Endoglucanase 9 OS=Oryza sativa subsp. japonica GN... [more]
GUN10_ORYSJ3.089e-4862.99Endoglucanase 10 OS=Oryza sativa subsp. japonica G... [more]
GUN12_ORYSJ2.488e-3451.01Endoglucanase 12 OS=Oryza sativa subsp. japonica G... [more]
GUN7_ARATH4.353e-3451.70Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE... [more]
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Properties
Property NameValue
Genbank descriptionC32013B01EF RVDevelop1 Citrus clementina cDNA clone C32013B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920792 ID=FC920792; Name=FC920792; organism=Citrus clementina; type=EST; length=722bp
GATGGAAAAATTCAGCAAGTAATTCGACAGCCAGATCAGAGCACCACCGT
CACCACCAAATCACACCACACAACTCTACAAAACCAGACCGGAGCATTCA
CAGTACAAACTTTCCATCTTAATTCTTGAGAGAGAAAGAGATCTAACATA
TCTTTAGCTGAGGGGAGAGTGAGTGAGTGTGAGATTTGATTTGGTAACAA
ACAATGAGTATGTTTGGAAGAGATCCGTGGGGTGGCCCACTGGAGATCAA
CGCGGCGGACTCAGCCACTGACGACGATCGGAGCAGGAACCTTCAGGATT
TCGACAGGGCAGCTCTGTCTCGGCCCTTGGATGAGACCCAGCAGAGCTGG
CTTCTGGGTCCCACCGAAAAGAAGAAGAAGAAGTACGTAGATCTGGGTTG
CATCATCGTCAGCCGTAAGATCTTCGTCTGGACTGTCGGCACTCTTCTCG
TCTCCGCACTCTTAGCCGGCTTCATCACTCTTATTGTCAAAACGGTGCCG
CGTCATCACCACTCTCATGCTCGCCCTGATAATTACACTCTCGCTTTGCA
CAAGGCCCTCATGTTCTTCAATGCCCAACGATCTGGCAAATTACCCAAGC
ATAATAACGTTTCTTGGAGGGGAAATTCTTGTCTGAAGGATGGCAAATCG
GCTTCCTCTAGTATTTCCAGGATCTGGTTGGGGGTTTTACGATGCTGGGG
ATGCCATTAAGTTAATTTCCTC
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