FC920794

Overview
NameFC920794
Unique NameFC920794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14244 contig Ccv1_Contig14244:28..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72
Identity = 130/197 (65.99%), Postives = 161/197 (81.73%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS-----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGL-FKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVWLI 630
            + +NKQVI K++V GFPKE+D     +++ L+V EGS ++LVKNLYLSCDPYMR+RM     PD SS     + PG PI G+GV++V++SGHP++KKGDL+WG  GWEEYS+I     + FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PKKGE +YVSAASGAVGQLVGQFAK+MGCYVVGSAGS+EKV L+
Sbjct:    1 MTTNKQVIFKDHVSGFPKESDFNFTTTTVELRVPEGSKSVLVKNLYLSCDPYMRSRMG---KPDPSSALAQAYAPGKPIYGYGVSRVIESGHPDYKKGDLLWGIVGWEEYSVITPMAHMHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKKGETVYVSAASGAVGQLVGQFAKMMGCYVVGSAGSKEKVDLL 194          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.961e-71
Identity = 126/194 (64.95%), Postives = 159/194 (81.96%), Query Frame = 1
Query:   64 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSS----FTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKN-PQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVWLI 630
            +NKQVILK+YV GFP E+D     +++ L+V EG+N++LVKNLYLSCDPYMR RM    DP  ++    +TPG PI+G+GV+++++SGHP++KKGDL+WG   WEEYS+I       FKI HTDVPLSYYTG+LGMPGMTA+AGFYE+C+PK+GE +YVSAASGAVGQLVGQ AK+MGCYVVGSAGS+EKV L+
Sbjct:    4 TNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMG-KPDPSTAALAQAYTPGQPIQGYGVSRIIESGHPDYKKGDLLWGIVAWEEYSVITPMTHAHFKIQHTDVPLSYYTGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.047e-29
Identity = 85/201 (42.29%), Postives = 114/201 (56.72%), Query Frame = 1
Query:   58 VVSNKQVILKNYVE---GFPKETDMLV----KASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI-KNPQGLFKIHHTD--VPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREK 618
            +VSN  VI+K Y++   G+P   + L     +    + +V+E    +L+KN+Y S DPY+R RM   Q P  +S+ P    G P     VAKVV S   ++K G  V   +GWEEY+ + K   G  +  +    +PL  + G LGMP  TA+ G   I  PK GE IY+SAASGAVGQ+ GQ AK MG +VVGS GS EK
Sbjct:    1 MVSNNAVIIKKYLDSTAGYPVIGEHLAFEKREFDLENAQVDE-ETPVLLKNIYTSVDPYLRMRM---QSPKHASYIPPLELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQALGFLQPINNPYKLPLIDFVGSLGMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEK 197          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.468e-28
Identity = 73/188 (38.83%), Postives = 108/188 (57.45%), Query Frame = 1
Query:   67 NKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTP----GSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREK 618
            N++ +L +   G P   +  ++   ++     G   +L++ +YLS DPYMR RMS     D  S++P    G  + G  V++VV+S HP+++ GD V G +GW++Y  I +   L K+       S+  G+LGMPG TA+ G  +I  PK+GE + V+AA+G VG  VGQ  KL GC VVG AG  EK
Sbjct:    8 NRRWVLASRPHGAPVPENFRLEEDDVATP---GEGQVLLRTVYLSLDPYMRGRMS-----DEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGWQDYD-ISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATGPVGATVGQIGKLKGCRVVGVAGGAEK 186          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 79/199 (39.70%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   64 SNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKVWLIPMQSQLVIAI 660
            S +Q+ L    +G P   D   +   +    E     +LVK LY+S DPYMR RM   +      F     + G  +A+VV  G+   KKGD+V G   W+E+S +     L KI  +  P S Y GILGM G+TA+ G  +I  PK+GE + VS A+GAVG  VGQ AK+ G  VVG AGS EK+  +  + Q   AI
Sbjct:    4 SQQQIQLARRPQGIPVHEDFRFETIPVP---EPKQGEVLVKTLYVSVDPYMRGRMQDTKSY-VEPFALDKALSGGVIAEVVSDGN-HLKKGDIVIGNLSWQEFSAVSE-SALRKIDTSLAPASAYLGILGMTGLTAYFGLLDIGRPKEGETVVVSGAAGAVGSTVGQIAKIKGARVVGIAGSDEKIDYLKQELQFDEAI 196          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_MOUSE (Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.120e-27
Identity = 77/191 (40.31%), Postives = 106/191 (55.50%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIH---HTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV 621
            +V  K   LK + EGFP + +  +K + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F KG +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    1 MVQAKSWTLKKHFEGFPTDGNFELKTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDRMMGEQVARVVESKNSAFPKGTIVAALLGWTSHS-ISDGNGLTKLPVEWPDKLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVMVSAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKV 179          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 79/194 (40.72%), Postives = 110/194 (56.70%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV-WL 627
            +V  K   LK +  G+P  +D  +K   +   +++G   +L++ LYL+ DPYMR            S   G  + G  VA+VV+S +  F  G +V   +GW  +S I N + L K+       +PLS   G +GMPG+TA+ G  +IC  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EKV WL
Sbjct:    1 MVHAKSWTLKKHFVGYPTNSDFELKTVELP-PLKDGE--VLLEALYLTVDPYMRIMAK--------SLKEGDMMMGEQVARVVESKNSAFPTGTIVLAPSGWTTHS-ISNGEKLEKVLAEWPDTLPLSLALGTVGMPGLTAYFGLLDICGVKGGETVLVSAAAGAVGSIVGQIAKLKGCKVVGTAGSDEKVAWL 182          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_RAT (Prostaglandin reductase 1 OS=Rattus norvegicus GN=Ptgr1 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 74/191 (38.74%), Postives = 106/191 (55.50%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKIHHT---DVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV 621
            +V  K   LK + EGFP +++  ++ + +       +  +L++ L+LS DPYMR                G  + G  VA+VV+S +  F  G +V    GW  +S I +  GL K+       +PLS   G +GMPG+TA+ G  +IC  K GE + V+AA+GAVG +VGQ AKL GC VVG+AGS EKV
Sbjct:    1 MVQAKTWTLKKHFEGFPTDSNFELRTTELP---PLNNGEVLLEALFLSVDPYMRVAAK--------KLKEGDSMMGEQVARVVESKNSAFPTGTIVVALLGWTSHS-ISDGNGLRKLPAEWPDKLPLSLALGTVGMPGLTAYFGLLDICGLKGGETVLVNAAAGAVGSVVGQIAKLKGCKVVGTAGSDEKV 179          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 73/190 (38.42%), Postives = 107/190 (56.32%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLI--KNPQGLFKIHHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV 621
            +V  K   LK +  G+P  +D  +K + +   ++ G   +L++ L+L+ DPYMR      ++        G  + G  VAKVV+S +    KG +V  + GW  +S+   K+ + L       +PLS   G +GMPG+TA+ G  EIC  K GE + V+AA+GAVG +VGQ AKL GC VVG+ GS EKV
Sbjct:    1 MVRTKTWTLKKHFVGYPTNSDFELKTAELP-PLKNGE--VLLEALFLTVDPYMRVAAKRLKE--------GDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKV 179          
BLAST of FC920794 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 74/191 (38.74%), Postives = 110/191 (57.59%), Query Frame = 1
Query:   58 VVSNKQVILKNYVEGFPKETDMLVKASSISLKVEEGSNAILVKNLYLSCDPYMRARMSFNQDPDFSSFTPGSPIEGFGVAKVVDSGHPEFKKGDLVWGTTGWEEYSLIKNPQGLFKI---HHTDVPLSYYTGILGMPGMTAWAGFYEICAPKKGEYIYVSAASGAVGQLVGQFAKLMGCYVVGSAGSREKV 621
            +V  K   LK + +G P ++D  +K   +   ++ G   +L++ L+LS DPYMR      ++        G+ + G  VA+VV+S +  F  G +V   +GW  +  I + +GL K+       +PLS   G +GMPG+TA+ G  E+C  K GE + VSAA+GAVG +VGQ AKL GC VVG+AGS EK+
Sbjct:    1 MVKAKSWTLKKHFQGKPTQSDFELKTVELP-PLKNGE--VLLEALFLSVDPYMRIASKRLKE--------GAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTTH-FISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI 179          
The following BLAST results are available for this feature:
BLAST of FC920794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
P2_ARATH8.222e-7265.99Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH6.961e-7164.95Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO5.047e-2942.29Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI1.468e-2838.83Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU3.271e-2839.70Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_MOUSE2.120e-2740.31Prostaglandin reductase 1 OS=Mus musculus GN=Ptgr1... [more]
PTGR1_BOVIN4.723e-2740.72Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
PTGR1_RAT3.999e-2638.74Prostaglandin reductase 1 OS=Rattus norvegicus GN=... [more]
PTGR1_HUMAN6.821e-2638.42Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_CAVPO6.821e-2638.74Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]

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Properties
Property NameValue
Genbank descriptionC32013B04EF RVDevelop1 Citrus clementina cDNA clone C32013B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920794 ID=FC920794; Name=FC920794; organism=Citrus clementina; type=EST; length=686bp
GTCAGAAACAGAGTGAAACAAGGAAGAAACAGAGCAACAATGGCGGCTAA
CAGCGAAGTGGTGAGCAACAAGCAGGTGATATTAAAGAACTACGTAGAAG
GGTTTCCCAAAGAGACAGACATGTTGGTAAAAGCAAGTTCAATTTCATTG
AAAGTAGAGGAAGGCTCAAATGCAATTCTTGTCAAGAATCTTTACTTGTC
TTGCGATCCTTACATGAGAGCTCGCATGTCCTTTAATCAAGATCCTGATT
TCTCTTCTTTCACTCCTGGCTCTCCCATAGAAGGATTTGGAGTGGCTAAG
GTGGTGGATTCAGGACACCCAGAATTCAAGAAAGGAGATTTAGTCTGGGG
AACAACTGGGTGGGAAGAGTATAGTCTCATAAAAAATCCTCAGGGCCTCT
TTAAAATTCATCACACTGATGTTCCCCTTTCTTATTATACTGGAATTCTT
GGTATGCCTGGGATGACAGCTTGGGCTGGTTTTTATGAAATTTGTGCTCC
AAAGAAAGGCGAATACATCTATGTTTCTGCAGCATCTGGTGCAGTTGGTC
AGCTTGTTGGGCAATTTGCAAAGTTGATGGGTTGCTATGTTGTTGGAAGT
GCTGGCAGTAGAGAAAAGGTGTGGTTAATTCCAATGCAGTCCCAATTGGT
AATTGCNATTCAAAATTTTGCAGTCCTTGGATGATC
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