FC920796

Overview
NameFC920796
Unique NameFC920796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:8..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920796 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.619e-35
Identity = 96/191 (50.26%), Postives = 111/191 (58.12%), Query Frame = 3
Query:   81 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPQAK 647
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL  AVIP  K
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGK 181          

HSP 2 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 608
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
BLAST of FC920796 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.325e-32
Identity = 92/192 (47.92%), Postives = 100/192 (52.08%), Query Frame = 3
Query:   81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPQAKA 650
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIP  K+
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKS 185          

HSP 2 Score: 21.9422 bits (45), Expect = 1.325e-32
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  641 GKSFRSALGL 670
            GKSF+SALGL
Sbjct:  183 GKSFKSALGL 192          

HSP 3 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 608
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of FC920796 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 89/189 (47.09%), Postives = 98/189 (51.85%), Query Frame = 3
Query:   81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPQAK 647
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL  AVIP  K
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGK 182          

HSP 2 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 608
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of FC920796 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.106e-31
Identity = 89/192 (46.35%), Postives = 99/192 (51.56%), Query Frame = 3
Query:   81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPQAKA 650
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL  AVIP  K+
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKS 185          

HSP 2 Score: 21.9422 bits (45), Expect = 4.106e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 2
Query:  641 GKSFRSALGL 670
            GKSF+SALGL
Sbjct:  183 GKSFKSALGL 192          

HSP 3 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 608
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of FC920796 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 72/106 (67.92%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  330 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGGAVIPQAK 647
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL  AVIP  K
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGK 172          

HSP 2 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 608
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
The following BLAST results are available for this feature:
BLAST of FC920796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL7.619e-3550.26Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_SOLLC1.325e-3247.92Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_TOBAC2.075e-3247.09Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG4.106e-3146.35Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH1.644e-2967.92Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC32013B06EF RVDevelop1 Citrus clementina cDNA clone C32013B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920796 ID=FC920796; Name=FC920796; organism=Citrus clementina; type=EST; length=670bp
GCTAGAGAATCTGAAACAGTGATCCTAGCTTTGCTGGCTTGAGAAATCTA
GCAGAGTGACAACATATTCATTCAATATTAATGGCTCAAACTATGCTGCT
CATGTCTGGGGTTTCCACTAGCCACGCAGGAAACTTGAAAAGAGACTCTT
TAGTCACATTTCAAACGCAGATGCTGAGACCTAAGCCATTCTCTCATCTT
ATGTTCAACCCACTCTCTAATGAATCTTTAACTGCTGCTGCGGCTTCTTC
ATCATCTAAAGCTTTTTCTACTGTTGCCCTCTTCAAATCTAAAACCAAAG
CTCCACCCAAGACCAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGATGGT
ATCTTTGGGACCTCTGGAGGATTTGGTTTTACAAAGCAAAATGAGCTCTT
TGTTGGTCGTGTTGCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGG
GAATAACTGGGAAGGGGATTCTAGCTCAGTTGAATTTAGAGACCGGAATT
CCAATCTATGAAGCAGAGCCACTGCTTTTATTTTTCATCTTGTTCACCTT
GCTTGGAGCAATTGGAGCTTTGGGTGACCGTGGTAAGTTCGTTGATGAGC
CAGATGAGCCCACTGGGCTCGGAGGAGCTGTCATTCCTCAGGCAAAAGCT
TTAGATCAGCGTTGGGTCTC
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