FC920918

Overview
NameFC920918
Unique NameFC920918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14214 contig Ccv1_Contig14214:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.593e-77
Identity = 132/158 (83.54%), Postives = 139/158 (87.97%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGI+PDGTMPSDTSVG  HDAFNTFFSETGSG+HVPRA+FVDLEP+VIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 1.593e-77
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.593e-77
Identity = 132/158 (83.54%), Postives = 139/158 (87.97%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGI+PDGTMPSDTSVG  HDAFNTFFSETGSG+HVPRA+FVDLEP+VIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 1.593e-77
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 7.841e-77
Identity = 130/158 (82.28%), Postives = 139/158 (87.97%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGI+PDGTMPSDT+VG  HDAFNTFFSETG+G+HVPRA+FVDLEP+VIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 7.841e-77
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.334e-76
Identity = 131/158 (82.91%), Postives = 138/158 (87.34%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGNSCWELYCLEHGIQPDG MPSDT+VG  HDAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 1.334e-76
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.334e-76
Identity = 130/158 (82.28%), Postives = 139/158 (87.97%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSD++VGACHDAFNTFFSET SGQHVPRAVF+DLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVGREIVD CL+R+RKLADNCTGLQGFLVF+AV                 VD+GKKS
Sbjct:    8 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 1.334e-76
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 5.034e-76
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGI+ DGTMPSD+SVG  HDAFNTFFSETGSG+HVPRA+FVDLEP+VIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 5.034e-76
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 2.478e-75
Identity = 128/158 (81.01%), Postives = 137/158 (86.71%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGI  DGTMPSDT+VG  HDAFNTFFSETG+G+HVPRA+FVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCLDRVRKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 2.478e-75
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.219e-74
Identity = 127/158 (80.38%), Postives = 137/158 (86.71%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGIQ DGTMPSDT+VG  HDAFNTFFSETG+G+HVPRA+FVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYTVG+EIVDLCL RVR+LADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 34.2686 bits (77), Expect = 1.219e-74
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFTIYPSPQVST
Sbjct:  163 KKSKLGFTIYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 7.827e-74
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 33.8834 bits (76), Expect = 7.827e-74
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFT+YPSPQVST
Sbjct:  163 KKSKLGFTVYPSPQVST 179
[Close]
BLAST of FC920918 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 7.827e-74
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 3 
Query:  177 HIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGACHDAFNTFFSETGSGQHVPRAVFVDLEPSVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFLVFSAVXXXXXXXXXXXXXXXXXVDYGKKS 650
            HIGQAGIQVGN+CWELYCLEHGIQPDG MPSD +VG   DAFNTFFSETG+G+HVPRAVFVDLEP+VIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKS
Sbjct:    8 HIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKS 165

HSP 2 Score: 33.8834 bits (76), Expect = 7.827e-74
Identity = 14/17 (82.35%), Postives = 16/17 (94.12%), Query Frame = 2 
Query:  641 KEVKLGFTIYPSPQVST 691
            K+ KLGFT+YPSPQVST
Sbjct:  163 KKSKLGFTVYPSPQVST 179
The following BLAST results are available for this feature:
BLAST of FC920918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
TBA6_MAIZE1.593e-7783.54Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA3_ELEIN1.593e-7783.54Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ7.841e-7782.28Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA3_ARATH1.334e-7682.91Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA1_ARATH1.334e-7682.28Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA5_MAIZE5.034e-7682.28Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA1_HORVU2.478e-7581.01Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA_AVESA1.219e-7480.38Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA4_GOSHI7.827e-7479.75Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI7.827e-7479.75Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32014G08EF RVDevelop1 Citrus clementina cDNA clone C32014G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920918 ID=FC920918; Name=FC920918; organism=Citrus clementina; type=EST; length=691bp
AGGAATTTTCGCCTTTATGTATCCACGTTCAGTAATAACAAAGCAACGGG
GAAAAAAAAAAGCTTCTCTTGGTTTCTCTTCTTTTCATTATCTGTAAGTA
ATTGATCATAAATCATAATAAGATTGTGGGGTTTCGGATTTGAAGAGAAA
GAGAGATGAGGGAAATAATAAGCATTCATATAGGACAGGCAGGGATTCAG
GTTGGGAATTCATGTTGGGAGCTTTACTGCCTCGAACATGGGATTCAGCC
TGATGGAACCATGCCCAGTGACACCTCTGTAGGTGCTTGCCATGATGCTT
TCAATACATTCTTCAGCGAGACTGGTTCTGGGCAGCATGTGCCTAGAGCA
GTATTTGTTGATCTGGAACCCAGTGTTATTGATGAGGTAAGAACTGGGTC
TTATAGACAACTTTTTCACCCAGAGCAACTCATCTCTGGCAAGGAAGATG
CTGCCAATAACTTTGCCAGAGGACACTACACAGTGGGGCGGGAAATTGTT
GATCTCTGCCTTGACCGAGTAAGAAAACTGGCTGACAATTGTACCGGTTT
GCAAGGATTTCTAGTATTTAGTGCTGTTGGTGGTGGCACTGGTTCTGGTT
TGGGTTCTTTACTTTTGGAACGCTTATCGGTTGATTATGGAAAGAAGTCA
AACTCGGCTTTACTATCTACCCATCTCCTCAGGTTTCAACT
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