FC920920

Overview
NameFC920920
Unique NameFC920920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12251 contig Ccv1_Contig12251:81..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920920 vs. ExPASy Swiss-Prot
Match: STT7_ARATH (Serine/threonine-protein kinase SNT7, chloroplastic OS=Arabidopsis thaliana GN=SNT7 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 9.746e-75
Identity = 140/188 (74.47%), Postives = 162/188 (86.17%), Query Frame = 1
Query:  121 FLGKRLVLIKPFS--------KNNISSSLTTKAELIDTVRDVFLGVGVGLPCTVMECGDIIYRSTLPKSNGLTITAPGVALALSAISYLWATPGVAPGFFDMFVLAFVERLFRTTYRKDDFVLGKKLGEGAFGVVYRASLAKKPSSKNDGDLVLKKATEYGAVEIWMNERVRRACANCCADFVYGFFE 660
            FLGK+L   KPFS        K  +  + + +A+LIDTV ++F+GVGVGLPCTVMECGD+IYRSTLPKSNGLTITAPGVALAL+A+SYLWATPGVAPGFFDMFVLAFVERLFR T+RKDDFV+GKKLGEG+FGVVY+ SL+KK S++ +G+ VLKKATEYGAVEIWMNERVRRAC N CADFVYGF +
Sbjct:   17 FLGKKL---KPFSLTSPILSFKPTVKLNSSCRAQLIDTVHNLFIGVGVGLPCTVMECGDMIYRSTLPKSNGLTITAPGVALALTALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVVGKKLGEGSFGVVYKVSLSKKRSNE-EGEYVLKKATEYGAVEIWMNERVRRACGNSCADFVYGFLD 200          
BLAST of FC920920 vs. ExPASy Swiss-Prot
Match: STT7_CHLRE (Serine/threonine-protein kinase stt7, chloroplastic OS=Chlamydomonas reinhardtii GN=STT7 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.061e-24
Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 1
Query:  238 VGLPCTVMECGDIIYRSTLPKS--NGLTITAPGVALALSAISYLWATPGVAPGFFDMFVLAFVERLFRTTYRKDDFVLGKKLGEGAFGVVYRASLAKKPSSKNDGDLVLKKATEYGAVEIWMNERVRRACANCCADFVYGFFEN 663
            +  PC VM+CGDI+YRSTL  S  N        VAL    ++YL+  PGV PG  D ++ A ++R       K+D VLGK+LG G FG V++  L ++   K    +++KKA E+G  E+WMNER+ R   +  A+FV  F E+
Sbjct:   64 IAAPCQVMKCGDIVYRSTLDPSLYNEAGFDEKTVALLAPVLAYLFLPPGVLPGAIDYYIRAPLKRKQTKAIDKNDIVLGKRLGTGGFGTVFKGELKEEGGVKT--SIIIKKAKEFGEAEVWMNERMSRVAGHHVAEFVTAFDES 205          
The following BLAST results are available for this feature:
BLAST of FC920920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STT7_ARATH9.746e-7574.47Serine/threonine-protein kinase SNT7, chloroplasti... [more]
STT7_CHLRE2.061e-2440.97Serine/threonine-protein kinase stt7, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionC32014G10EF RVDevelop1 Citrus clementina cDNA clone C32014G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920920 ID=FC920920; Name=FC920920; organism=Citrus clementina; type=EST; length=664bp
ATTAACTCGAGCAGATCCTCACTCTGCAGCAGAAACATGGCCACGGTTGC
ATCAGGAAGTGCTACTCTAGTACTAATCAATCGCCGAAGTACTCCAAAAT
CAAAGCCCCCGTCATCTCCATTTCTTGGAAAAAGGCTAGTACTAATCAAA
CCCTTTTCAAAAAACAATATTAGCTCAAGTTTGACGACAAAAGCTGAGCT
GATTGATACAGTTCGCGATGTGTTTCTGGGTGTGGGAGTGGGTTTGCCAT
GCACAGTCATGGAGTGTGGTGATATCATATACAGAAGCACTTTGCCTAAG
TCCAATGGTCTGACAATTACTGCACCTGGTGTGGCTTTGGCTCTTAGTGC
TATTTCTTATCTCTGGGCCACCCCCGGCGTGGCTCCTGGGTTTTTTGACA
TGTTTGTGCTTGCTTTTGTCGAAAGGCTATTTCGAACCACTTATAGGAAG
GATGATTTTGTTTTGGGAAAAAAGTTGGGTGAGGGAGCTTTTGGCGTTGT
TTATAGAGCTTCCTTGGCTAAGAAGCCTTCTTCCAAGAATGATGGTGACT
TGGTCTTGAAGAAGGCTACTGAATATGGTGCAGTGGAAATTTGGATGAAT
GAGCGTGTTCGAAGAGCTTGTGCAAACTGCTGTGCTGATTTTGTATACGG
CTTTTTTGAGAATT
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