FC920927

Overview
NameFC920927
Unique NameFC920927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:9..397. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23
Identity = 55/103 (53.40%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   94 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQ 384
            GSA  CG      +CPGG CCS +GWCG T+D+C DGCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AA+
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAK 119          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   94 GSAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            GSA  CG    G VCPGG CCS+FGWCG T D+C  GCQS C+                 G++G++I+R MF D+L++RN+  CP + FYTYDAFI AA++
Sbjct:   18 GSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSST---------------GDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKA 103          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   94 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGE-----CDPDDGTAGDG--GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQ 384
            GSA  CG      +CPGG CCS +GWCG T+D+C  GCQS C+    G+     CD  D   GDG  G L  II +  F+ LL++RND RCPA  FYTY+AFI AA+
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSSYGWCGTTVDYCGIGCQSQCDGGGGGDGGDDGCDGGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAK 126          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.999e-23
Identity = 54/103 (52.43%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   94 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCC--DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            GSA  CG    G +CPGG CCS+FGWCG T D+C   +GCQS C+           G+ GD G L  +I+RE F+ +L +RND  CPAR FYTYDAFI AA+S
Sbjct:   19 GSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCS-----------GSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKS 110          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.529e-23
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   94 GSAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDG----GELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQ 384
            GSA  CG      +CPGG CCS +GWCG T D+C DGCQS C+    G      G  G G    G L  II   MF+D+L+YRND +CPA  FYTY+AFI AA+
Sbjct:   19 GSAEQCGQQAGDALCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAK 122          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.527e-23
Identity = 48/99 (48.48%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  100 AGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            A  CGS   G VCP   CCS+FGWCG T D+C  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA +
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASA 119          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.240e-22
Identity = 54/102 (52.94%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   94 GSAGNCG---SGVVCPGGECCSRFGWCGLTIDHCC-DGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            GSA  CG    G +CPGG CCS+FGWCG T D+C   GCQS C+           G A   G L  +ISRE F  +L +RND  CPAR FYTYDAFI AA+S
Sbjct:   20 GSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARS 112          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.231e-21
Identity = 50/103 (48.54%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   91 GGSAGN-CG---SGVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            GGS G  CG    G +CPGG CCS+FGWCG T D+C  GCQS C            G +    +L  +ISR  F+ +L++RND  CPA+ FYTYDAFI AA++
Sbjct:   23 GGSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCG-----------GPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKA 114          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.743e-21
Identity = 47/100 (47.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   97 SAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            SA  CG+   G +CPGG CCS+FGWCG T ++C DGCQS C+           G++G GG L  +IS + F ++L++RND  C  + FYTYDAF+ AA++
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKA 106          
BLAST of FC920927 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.583e-21
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   91 GGSAGNCGS---GVVCPGGECCSRFGWCGLTIDHCCDGCQSNCNQVVCGECDPDDGTAGDGGELGKIISREMFEDLLEYRNDKRCPARCFYTYDAFIEAAQS 387
            G  A  CGS   G VCP G CCS+FG+CG T  +C DGCQS C         P   T G  G++G+++   +F+ +L+YRND RC    FYTYDAFI AA+S
Sbjct:   20 GSKAEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKSSPTPTI-PTPSTGG--GDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARS 118          
The following BLAST results are available for this feature:
BLAST of FC920927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CHIC_POPTR2.931e-2353.40Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIB_VITVI2.931e-2348.51Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR2.931e-2350.47Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_THECC4.999e-2352.43Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIB_POPTR6.529e-2350.96Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI12_ORYSJ8.527e-2348.48Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI1_GOSHI3.240e-2252.94Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_PHAVU1.231e-2148.54Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_PEA2.743e-2147.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIX_PEA3.583e-2148.04Endochitinase OS=Pisum sativum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32014H07EF RVDevelop1 Citrus clementina cDNA clone C32014H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920927 ID=FC920927; Name=FC920927; organism=Citrus clementina; type=EST; length=389bp
AGCAGAGGATAATTTCTTCATAACTGTTGCTTTCAAATGAGGCTTATTGC
GTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACTAGGAGGCTCAG
CAGGGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGGAGTGTTGTAGT
CGATTTGGTTGGTGTGGCCTAACAATAGACCACTGTTGTGACGGCTGCCA
AAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCCCGACGACGGGA
CGGCTGGTGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTT
GAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCTGCCAGATGCTT
CTACACTTATGATGCTTTTATAGAGGCAGCCCAAAGCTT
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