FC920947

Overview
NameFC920947
Unique NameFC920947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15069 contig Ccv1_Contig15069:6..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.230e-11
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 3 
Query:   84 FLTRILATMNPARVAFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            FLT  LA      V+ +     ++LT H   Q+ S H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL L + YL     ++ +  EI+G+ I  S        R    +   L+  K  T QF +++PV +++ I LQ    Y
Sbjct:   52 FLTSALAR----GVSGVFVWTALLLTGH---QIYS-HLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212

HSP 2 Score: 23.8682 bits (50), Expect = 1.230e-11
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 2 
Query:  644 SVSLALYSLVIFY 682
            SVSLALY+L +FY
Sbjct:  233 SVSLALYALFLFY 245
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.597e-11
Identity = 50/173 (28.90%), Postives = 82/173 (47.40%), Query Frame = 3 
Query:   84 FLTRILATMNPARVAFMAATVCVMLTTHFSTQLLSEHFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            FLT  LA      V+ +     ++LT H   Q+ S H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL L + YL     ++ +  EI+G+ I  S        R    +   L+  K  T QF +++PV +++ I LQ    Y
Sbjct:   52 FLTSALAR----GVSGVFVWTALLLTGH---QIYS-HLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212

HSP 2 Score: 23.8682 bits (50), Expect = 1.597e-11
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 2 
Query:  644 SVSLALYSLVIFY 682
            SVSLALY+L +FY
Sbjct:  233 SVSLALYALFLFY 245
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.693e-11
Identity = 40/137 (29.20%), Postives = 66/137 (48.18%), Query Frame = 3 
Query:  192 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            H  S+  P+EQ+              DS++ L+   G   ++++ +SV++CYEA VI  FL+L + YL     +  +  EI+G+ I  S        R    +   L+  K  T QF +++PV ++  I LQ  G Y
Sbjct:   77 HLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKY 209

HSP 2 Score: 23.8682 bits (50), Expect = 2.693e-11
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 2 
Query:  644 SVSLALYSLVIFY 682
            SVSLALY+L +FY
Sbjct:  230 SVSLALYALFLFY 242
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184B_MOUSE (Transmembrane protein 184B OS=Mus musculus GN=Tmem184b PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.497e-11
Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 3 
Query:  192 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHS--FPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            H   + +P EQ+              DS++ L+ F   + ++++  +V++CYEA VI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y
Sbjct:   68 HLRCYSRPNEQRHIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEAFVIYNFLSLCYEYLG---GESAIMSEIRGKAIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVILQAFGKY 200

HSP 2 Score: 25.409 bits (54), Expect = 3.497e-11
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  641 ISVSLALYSLVIFY 682
            ISVSLALY+L +FY
Sbjct:  220 ISVSLALYALFLFY 233
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 4.539e-11
Identity = 39/139 (28.06%), Postives = 68/139 (48.92%), Query Frame = 3 
Query:  192 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHS--FPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            H   +  P EQ+              DS++ L+ F   + ++++  +V++CYEALVI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y
Sbjct:   68 HLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200

HSP 2 Score: 25.409 bits (54), Expect = 4.539e-11
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  641 ISVSLALYSLVIFY 682
            ISVSLALY+L +FY
Sbjct:  220 ISVSLALYALFLFY 233
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 4.539e-11
Identity = 39/139 (28.06%), Postives = 68/139 (48.92%), Query Frame = 3 
Query:  192 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHS--FPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            H   +  P EQ+              DS++ L+ F   + ++++  +V++CYEALVI  FL+L Y YL     ++ +  EI+G+ I  S  +       +T  +    L+  K  T QF V++P+ ++  + LQ  G Y
Sbjct:   68 HLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200

HSP 2 Score: 25.409 bits (54), Expect = 4.539e-11
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 2 
Query:  641 ISVSLALYSLVIFY 682
            ISVSLALY+L +FY
Sbjct:  220 ISVSLALYALFLFY 233
[Close]
BLAST of FC920947 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 9.921e-11
Identity = 38/137 (27.74%), Postives = 66/137 (48.18%), Query Frame = 3 
Query:  192 HFLSWKKPKEQKXXXXXXXXXXXXXXDSYVGLIDFQGSKAFFMFLESVKECYEALVIAKFLALLYSYLNISISKNIVPDEIKGREIHHSFPMTLFQPRTTRLNHHTLKLLKDWTWQFVVIRPVCSILMIALQLLGLY 602
            H  S+  P EQ+              DS++ L+   G    +++ +SV++CYEA VI  FL+L + YL     ++ +  EI+G+ +  S        R    +   L+  K  T QF +++P+ +++ I LQ  G Y
Sbjct:   67 HLRSYTVPHEQRYIIRLLFIVPVYAFDSWLSLL-LLGGHQHYIYFDSVRDCYEAFVIYSFLSLCFQYLG---GESAIMAEIRGKPVRTSCFHGTCCLRGMTYSIGFLRFCKQATLQFCIVKPIMALVTIVLQAFGKY 199

HSP 2 Score: 23.8682 bits (50), Expect = 9.921e-11
Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 2 
Query:  644 SVSLALYSLVIFY 682
            SVSLALY+L +FY
Sbjct:  220 SVSLALYALFLFY 232
The following BLAST results are available for this feature:
BLAST of FC920947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
T184A_MOUSE1.230e-1128.90Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]
T184A_RAT1.597e-1128.90Transmembrane protein 184A OS=Rattus norvegicus GN... [more]
T184A_HUMAN2.693e-1129.20Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184B_MOUSE3.497e-1127.34Transmembrane protein 184B OS=Mus musculus GN=Tmem... [more]
T184B_HUMAN4.539e-1128.06Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN4.539e-1128.06Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184A_BOVIN9.921e-1127.74Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32201B09EF RVDevelopN Citrus clementina cDNA clone C32201B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920947 ID=FC920947; Name=FC920947; organism=Citrus clementina; type=EST; length=732bp
CATCTAAGATCCTATCATTCTTACAAAAGCGAGTCAGCTGTCAACTGCAG
GAAGCTTGACTTTCAAAGAGTGTGAATTCGGGTTTTTTAACGAGAATTTT
AGCTACAATGAATCCGGCACGAGTCGCTTTTATGGCAGCCACTGTTTGCG
TGATGCTTACCACGCATTTCTCGACGCAGCTTCTCTCAGAACACTTTCTT
TCCTGGAAAAAGCCAAAGGAGCAAAAAGCTATAATAATTATCATTCTTAT
GGCACCTATATATGCTATTGACTCTTATGTTGGTTTGATAGATTTTCAGG
GGAGCAAGGCCTTTTTTATGTTCTTGGAATCAGTTAAGGAATGTTATGAG
GCCTTGGTGATAGCCAAGTTCTTGGCCTTGCTGTACAGCTACTTGAATAT
ATCAATAAGCAAAAACATAGTGCCAGATGAGATCAAAGGAAGGGAGATTC
ACCATTCATTTCCAATGACTCTTTTTCAGCCTCGGACAACTCGTTTGAAC
CATCATACACTAAAGCTTCTCAAGGACTGGACGTGGCAGTTTGTTGTGAT
CCGCCCTGTCTGCTCCATATTGATGATTGCTCTTCAACTTCTTGGGTTAT
ATTCCAATTGGATTAGCTGGACATTCACAATTATTCTTACATTTCTGTGT
CACTTGCTTTGTATTCTCTTGTCATCTTCTACCATGTTTCGCTAAAGAGT
GGCACACATAAGCACTTTCCAGTTTTGTGCAT
back to top