FC920949

Overview
NameFC920949
Unique NameFC920949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length242
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14221 contig Ccv1_Contig14221:234..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 1.659e-26
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVR 208
            AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD IEVDK TLDML ALGM+++PG+V+
Sbjct:   51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK 119          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.166e-26
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP---VAPGVEFG 241
            AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD+I+VDK TL+ML +LGM++ PG+  V+P   +AP   FG
Sbjct:   51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAPIAAFG 133          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.834e-25
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP---VAPGVEFG 241
            AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD+I+VDK TL+ML +LGM++  G+  V+P   +AP   FG
Sbjct:   51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAPIAAFG 133          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.834e-25
Identity = 60/83 (72.29%), Postives = 68/83 (81.93%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDP---VAPGVEFG 241
            AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIKTD+I+VDK TL+ML +LGM++  G+  VDP   +AP   FG
Sbjct:   51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAFG 133          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 5.900e-24
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVD---PVAPGV 232
            AGFSTHLM RIQ GPVRGISLKLQE ERERRMDFVPDESAIK D ++VDK TL+ML +LGM++I G+ +V+    +AP V
Sbjct:   51 AGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAV 130          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.123e-17
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPGVEF 238
            AG++THLM RIQ GPVRGIS KLQE ERER+  +VP+ S ++ D++ VD+ T DML++LG ++IP  VRV   AP   F
Sbjct:   51 AGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIP--VRVLAPAPQERF 127          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.556e-16
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLV 205
            AG++THLM RIQ GPVRGIS KLQE ERER+  +VP+ S ++ D+I VD+ T DML+ALG + IP +V
Sbjct:   51 AGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.009e-15
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGLVRVDPVAPG 229
            AGF+THLM R+++  VRGIS+KLQE ERERR ++VP+ SA++ D IEVD  T DML+ L  N I GL    P   G
Sbjct:   51 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQG 126          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.720e-15
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGL 202
            AGF THLM RIQ GPVRGISLKLQE ERERRMD++P++S ++   I+VD+ T DML  L ++ +P L
Sbjct:   51 AGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116          
BLAST of FC920949 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.720e-15
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 2
Query:    2 AGFSTHLMNRIQNGPVRGISLKLQEVERERRMDFVPDESAIKTDQIEVDKATLDMLEALGMNEIPGL 202
            AGF THLM RIQ GPVRGISLKLQE ERERRMD++P++S ++   I+VD+ T DML  L ++ +P L
Sbjct:   51 AGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116          
The following BLAST results are available for this feature:
BLAST of FC920949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS17_SOLLC1.659e-2684.0640S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS174_ARATH2.166e-2672.2940S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS172_ARATH1.834e-2571.0840S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS171_ARATH1.834e-2572.2940S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS173_ARATH5.900e-2470.0040S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS17A_SCHPO9.123e-1755.7040S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17B_SCHPO1.556e-1660.2940S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_SPOFR1.009e-1555.2640S ribosomal protein S17 OS=Spodoptera frugiperda... [more]
RS17_THEPA1.720e-1561.1940S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN1.720e-1561.1940S ribosomal protein S17 OS=Theileria annulata GN... [more]

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Properties
Property NameValue
Genbank descriptionC32201B12EF RVDevelopN Citrus clementina cDNA clone C32201B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920949 ID=FC920949; Name=FC920949; organism=Citrus clementina; type=EST; length=242bp
CGCCGGGTTCTCGACCCACTTGATGAACCGGATCCAGAATGGTCCGGTTC
GTGGCATCTCGTTGAAGCTCCAAGAGGTGGAGCGCGAGCGCCGCATGGAC
TTTGTCCCGGACGAGAGTGCCATCAAGACTGATCAAATTGAGGTCGATAA
GGCGACTCTTGACATGCTTGAGGCTCTTGGTATGAATGAGATCCCGGGTC
TTGTTCGGGTCGACCCGGTTGCTCCAGGAGTTGAGTTCGGGC
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