FC920960

Overview
NameFC920960
Unique NameFC920960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length597
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920960_ssr544 microsatellite FC920960_ssr544:544..555. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF06_ARATH (Defensin-like protein 6 OS=Arabidopsis thaliana GN=PDF2.5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  126 SQEMMVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            S + ++  EGR CQS+SHHF   C S+HNCA VCRNEGFSGG+C G  RRC+C++LC
Sbjct:   17 SSQEIIGGEGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC 73          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF_SOYBN (Defensin-like protein OS=Glycine max PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 3
Query:  126 SQEMMVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            + +++V  EGRVC+SQSH FHG C   HNCA VCRNEGFSGG+C+ + RRCFC+++C
Sbjct:   19 ASQVVVQTEGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKRS-RRCFCTRIC 74          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF1_VIGUN (Defensin-like protein 1 OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 3
Query:  156 RVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            RVC+SQSH F GAC   HNCA VCRNEGFSGG CRG RRRCFC+  C
Sbjct:    1 RVCESQSHGFKGACTGDHNCALVCRNEGFSGGNCRGFRRRCFCTLKC 47          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF01_ARATH (Defensin-like protein 1 OS=Arabidopsis thaliana GN=PDF2.3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.423e-15
Identity = 33/52 (63.46%), Postives = 38/52 (73.08%), Query Frame = 3
Query:  141 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            V  E R C+S+SH F G C S HNCA VC NEGF GGKCRG RRRC+C++ C
Sbjct:   26 VTVEARTCESKSHRFKGPCVSTHNCANVCHNEGFGGGKCRGFRRRCYCTRHC 77          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF_PETIN (Defensin-like protein OS=Petunia integrifolia PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 3
Query:  138 MVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            M  AE R C+SQSH FHG C    NCA VC+ EGF GG CR  RRRCFC++ C
Sbjct:   26 MTSAEARTCESQSHRFHGTCVRESNCASVCQTEGFIGGNCRAFRRRCFCTRNC 78          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF2_CAPAN (Defensin J1-2 OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:  147 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            AE R C+SQSH F G CFS  NC  VC  EGF+GG CRG RRRCFC++ C
Sbjct:   25 AEARTCESQSHRFKGLCFSKSNCGSVCHTEGFNGGHCRGFRRRCFCTRHC 74          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF02_ARATH (Defensin-like protein 2 OS=Arabidopsis thaliana GN=PDF2.2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.051e-14
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 3
Query:  141 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            V  E R C+SQSH F G C S  NCA VC NEGF GG CRG RRRCFC++ C
Sbjct:   26 VTVEARTCESQSHRFKGTCVSASNCANVCHNEGFVGGNCRGFRRRCFCTRHC 77          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF_NELNU (Defensin-like protein OS=Nelumbo nucifera PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query:  147 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            AE R C+SQSH F GAC S  NCA VC+ EGF  G C+GARRRCFC K C
Sbjct:   28 AEARTCESQSHRFKGACLSDTNCASVCQTEGFPAGDCKGARRRCFCVKPC 77          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DFSD2_HELAN (Defensin SD2 OS=Helianthus annuus GN=SD2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 3
Query:  150 EGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            E R C+SQSH F G C S  NCA VC +E FSGGKCRG RRRCFC+  C
Sbjct:   30 EARTCESQSHKFKGTCLSDTNCANVCHSERFSGGKCRGFRRRCFCTTHC 78          
BLAST of FC920960 vs. ExPASy Swiss-Prot
Match: DEF04_ARATH (Defensin-like protein 4 OS=Arabidopsis thaliana GN=PDF2.1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 3
Query:  141 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGARRRCFCSKLC 296
            V  E R C SQS  F G C S  NC  VC NEGF GG CRG RRRCFC++ C
Sbjct:   26 VTVEARTCASQSQRFKGKCVSDTNCENVCHNEGFPGGDCRGFRRRCFCTRNC 77          
The following BLAST results are available for this feature:
BLAST of FC920960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEF06_ARATH1.517e-1761.40Defensin-like protein 6 OS=Arabidopsis thaliana GN... [more]
DEF_SOYBN9.836e-1761.40Defensin-like protein OS=Glycine max PE=3 SV=1[more]
DEF1_VIGUN4.881e-1674.47Defensin-like protein 1 OS=Vigna unguiculata PE=1 ... [more]
DEF01_ARATH2.423e-1563.46Defensin-like protein 1 OS=Arabidopsis thaliana GN... [more]
DEF_PETIN1.570e-1460.38Defensin-like protein OS=Petunia integrifolia PE=2... [more]
DEF2_CAPAN1.570e-1464.00Defensin J1-2 OS=Capsicum annuum PE=1 SV=1[more]
DEF02_ARATH2.051e-1463.46Defensin-like protein 2 OS=Arabidopsis thaliana GN... [more]
DEF_NELNU2.678e-1466.00Defensin-like protein OS=Nelumbo nucifera PE=3 SV=... [more]
DFSD2_HELAN1.736e-1365.31Defensin SD2 OS=Helianthus annuus GN=SD2 PE=2 SV=1[more]
DEF04_ARATH1.920e-1259.62Defensin-like protein 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionC32201D03EF RVDevelopN Citrus clementina cDNA clone C32201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920960 ID=FC920960; Name=FC920960; organism=Citrus clementina; type=EST; length=597bp
CTTCTGGCTGATCTCTCTCATATATTATATTTGTGATTGTGGTTGCGAAA
ATTTACGAGCTAAAAGAAAAAATAAATATGAAGAGTTTCTTTGGGATTTT
CTTGCTGCTGCTCATTCTATTCGCTTCTCAAGAGATGATGGTGCCGGCAG
AGGGTAGGGTGTGTCAGTCACAGAGCCATCATTTCCATGGCGCATGCTTT
AGCCACCACAACTGTGCTTTTGTCTGCAGAAACGAAGGCTTCTCTGGTGG
CAAATGCCGTGGAGCCCGTCGCCGCTGCTTTTGCTCAAAGCTTTGCTAAT
TTCCCGTTGTCGGTCTTGCTTGTGTGCTCTCTTTTGCCACTTGTCCCTCA
ATAATGCATGGCTGGCTACTCTTCGTGCTAGTTTTAAGTGCGGTGTCTTA
GGGCTAGCTTAATATTAGTTACAAATAAGGAATGCTCTTTCGTTTTGGTT
TTGCTTAATTTGTGTATCATCTGGTATTGATACTCCAGCTGCTTGCCTAA
TGAAAGAGCATATCGTCTTGTAGTTTTTGTTTCGCTTGTTTGGATGAATG
AATGAGTTTGAATTCCTATGTCCAAAAAAAAAAAAAAAAAAAAAAAA
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