FC920961

Overview
NameFC920961
Unique NameFC920961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC920961 vs. ExPASy Swiss-Prot
Match: WDR89_DICDI (WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 63/204 (30.88%), Postives = 94/204 (46.08%), Query Frame = 2 
Query:    2 DGLICTFDTGGDINDDDLLESVINVGTSVGKVGFFGETNKHLWCLTHIETLSIWDWKDGQNVASF-ENARSLASDSWTLDDVDYFVDCHYPGEGENLWVIGGTGAGTVGYFPVNYGGAATIGPPEAVLVGGHTAIVRSVLPMPSVQGRPAQSHGIFGWTGGEDGRLCCWLSDDS----SEINRSWISNAMVMRSPKTHKKNRHN 598
            DGLIC +D     +DDD +  VIN   S+G +GFFG   ++L+ L+H E L+ WD   G  +  +  + RS  SD +   +++YF+ C Y      L + GG   GT   F V       I   E V    HT ++R+V           +S  I   T  ED ++  W ++ S     +IN    SN M     K+ K + +N
Sbjct:  170 DGLICMYDLE-QADDDDAIVHVINAEDSIGNIGFFGSAYQYLYTLSHTERLATWDLTTGLKIKHYGADLRSTLSDRYKF-EINYFISCIYDNASNQLILFGGDFNGTGHVFLVTPDEVIQISKLENV----HTDVIRNVF------WDKFKSELI---TSSEDSKIGFWTNNPSITNILKINNDTSSNKMKDDKLKSKKTSPYN 358
The following BLAST results are available for this feature:
BLAST of FC920961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WDR89_DICDI5.699e-1530.88WD repeat-containing protein 89 homolog OS=Dictyos... [more]
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Properties
Property NameValue
Genbank descriptionC32201D04EF RVDevelopN Citrus clementina cDNA clone C32201D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920961 ID=FC920961; Name=FC920961; organism=Citrus clementina; type=EST; length=703bp
GGATGGATTGATTTGTACATTTGATACTGGTGGAGATATCAATGATGATG
ATCTTCTGGAATCTGTGATCAATGTGGGAACGTCCGTTGGGAAAGTGGGC
TTCTTTGGAGAAACAAATAAACATCTCTGGTGTTTGACACACATCGAAAC
CTTGAGTATCTGGGATTGGAAGGACGGGCAGAATGTAGCTAGCTTTGAGA
ATGCTCGTTCATTAGCCTCCGACAGTTGGACACTGGATGATGTTGATTAT
TTTGTTGATTGCCACTATCCAGGCGAGGGTGAGAATTTGTGGGTTATTGG
AGGCACTGGTGCTGGTACAGTGGGCTATTTCCCTGTAAATTATGGAGGAG
CGGCAACAATAGGACCTCCAGAAGCAGTTCTTGTAGGTGGCCACACAGCC
ATTGTTCGTAGTGTGTTGCCTATGCCAAGCGTGCAGGGAAGGCCTGCCCA
AAGCCATGGAATTTTTGGCTGGACAGGTGGTGAGGATGGCCGCCTGTGCT
GTTGGTTGTCTGATGATTCTTCCGAGATAAATCGCTCGTGGATCTCTAAC
GCAATGGTTATGAGATCACCGAAGACACACAAGAAGAATAGGCATAATCC
TTACTGACGACCCAAAATTTATGGAAAGATTGTCCAATTTTGATTCCTTT
TCTTGGTTTAAAAGAAAAATTACCTGCACCGTGTGTTGTATGAATCCTTT
GTA
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