FC920968

Overview
NameFC920968
Unique NameFC920968
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14221 contig Ccv1_Contig14221:1..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.820e-57
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVR 441
            MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD IEVDKETLDML ALGM+++PG+V+
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK 119          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.889e-56
Identity = 109/122 (89.34%), Postives = 118/122 (96.72%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++ PG+  V+P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 216.083 bits (549), Expect = 1.434e-55
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++  G+  VDP
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.445e-55
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP 450
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++  G+  V+P
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEP 122          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.070e-54
Identity = 109/130 (83.85%), Postives = 120/130 (92.31%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVD---PVAPGV 465
            MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D ++VDKETL+ML +LGM++I G+ +V+    +AP V
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAV 130          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 81/118 (68.64%), Postives = 102/118 (86.44%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLV 438
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML+ALG + IP +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.303e-40
Identity = 83/125 (66.40%), Postives = 106/125 (84.80%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAP 459
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D++ VD++T DML++LG ++IP  VRV   AP
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIP--VRVLAPAP 123          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 76/117 (64.96%), Postives = 101/117 (86.32%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGL 435
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L ++ +P L
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 4.190e-39
Identity = 76/117 (64.96%), Postives = 101/117 (86.32%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGL 435
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L ++ +P L
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116          
BLAST of FC920968 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 79/126 (62.70%), Postives = 101/126 (80.16%), Query Frame = 1
Query:   85 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPG 462
            MGRVRTKTVKK+++ +IE+YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D IEVD +T DML+ L  N I GL    P   G
Sbjct:    1 MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQG 126          
The following BLAST results are available for this feature:
BLAST of FC920968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_SOLLC5.820e-5793.2840S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS174_ARATH2.889e-5689.3440S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH1.434e-5589.3440S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS172_ARATH2.445e-5588.5240S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH2.070e-5483.8540S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS17B_SCHPO1.303e-4068.6440S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17A_SCHPO1.303e-4066.4040S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_THEPA4.190e-3964.9640S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN4.190e-3964.9640S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_SPOFR9.335e-3962.7040S ribosomal protein S17 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionC32201D12EF RVDevelopN Citrus clementina cDNA clone C32201D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920968 ID=FC920968; Name=FC920968; organism=Citrus clementina; type=EST; length=691bp
GGGGCAACGCTAACAAAGCACGCACAGGCACAGAGCTCTCTTTCTCTTAT
ACGCCATTGTCAATCTCTCAGCAGCACAACCAAAATGGGTCGAGTCCGAA
CAAAGACAGTGAAGAAATCTTCGCGCCAAGTGATCGAGCGTTACTATTCA
CGCATGACCCTTGACTTCCACACGAACAAGAAGATCCTCGAGGAAGTGGC
GATCATCCCATCAAAACGGCTACGTAACAAGATCGCCGGGTTCTCGACCC
ACTTGATGAAACGGATCCAGAAGGGTCCGGTTCGTGGCATCTCGTTGAAG
CTCCAAGAGGAGGAGCGCGAGCGCCGCATGGACTTTGTCCCGGACGAGAG
TGCCATCAAGACTGATCAAATTGAGGTCGATAAGGAGACTCTTGACATGC
TTGAGGCTCTTGGTATGAATGAGATCCCGGGTCTTGTTCGGGTCGACCCG
GTTGCTCCAGGAGTTGAGTTCGGGCGTGGCGGCTTTGCTGGAGCCAGGAG
GAGGTTTTAGATAGTTGGGTTTTGGTTGGTGTTTGCTAGATTTCATTTTT
AAAGACTTAATTTGATGTTTTTGATTTTGCCGAATATGTTCATGGTTAAT
TTTGTTTTTGTTGGAACATTTTGATGTTATATTGAATGGGTACATTGTGC
CTCAGCTATTTTTGATCTTAAAAAAAAAAAAAAAAAAAAAA
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