FC920973

Overview
NameFC920973
Unique NameFC920973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2205 contig Ccv1_Contig2205:68..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920973 vs. ExPASy Swiss-Prot
Match: KTAP2_RAT (Keratinocyte-associated protein 2 OS=Rattus norvegicus GN=Krtcap2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:   75 MAGSGSSMLYSFLMFIVILSLQQVYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 404
            + G+G+S+  S L+ +++ +  Q+Y  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    2 VVGTGTSLALSSLLSLLLFAGMQIYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115
[Close]
BLAST of FC920973 vs. ExPASy Swiss-Prot
Match: KTAP2_MOUSE (Keratinocyte-associated protein 2 OS=Mus musculus GN=Krtcap2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.139e-11
Identity = 38/114 (33.33%), Postives = 61/114 (53.51%), Query Frame = 3 
Query:   75 MAGSGSSMLYSFLMFIVILSLQQVYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 404
            + G+G+S+  S L+ +++ +  Q+Y  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    2 VVGTGTSLALSSLLSLLLFAGMQIYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115
The following BLAST results are available for this feature:
BLAST of FC920973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KTAP2_RAT9.139e-1133.33Keratinocyte-associated protein 2 OS=Rattus norveg... [more]
KTAP2_MOUSE9.139e-1133.33Keratinocyte-associated protein 2 OS=Mus musculus ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32201E05EF RVDevelopN Citrus clementina cDNA clone C32201E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920973 ID=FC920973; Name=FC920973; organism=Citrus clementina; type=EST; length=637bp
GGTGACGCATCAGCGAAGGAGAGACGTATCAACTAACGAGATCGGATCGG
AGGGGCTAGGGTTTTTCAAAGGCCATGGCTGGGTCTGGGAGTTCGATGCT
CTATTCATTTCTTATGTTTATTGTCATCCTCTCTCTTCAACAAGTGTATA
GAGGGAAGCTGGCATCAACGGAGTTGTTTACGATTCTTGGAGGCTTCATC
AGCTCACTCATATTCCTTGTGTCACTGACGTTCATTGGAAATTTTCAGGA
AACAAGTGGTATGAAGACTGGATGGGGTGCTGTTATAGTGGCGGAACTGA
TTGCTCTGATTGCTGCTAGCACTGTTCATCGAGTCTGCATTACAACATGT
TTCTTGTTCTCAGCTGGACTGCTGTACGAGGTCAACAAGCTTTCAGGGAT
GATGATTGCCAGAAGTGAATCCAAAACAAAAAGGCATTGATGATGCCGGA
TAAATTACAAGAGGTTTTATCATCTTATCTTTGTATCCATAATCATTTTT
TAGTGTAGCGGATAACTATCAAAAACGAAAAATTACTGATACTTTATAGT
TTGTCTGACAGTGATTGTCTGTTTGATACATTTTTGTGTCCAACATATTT
ACAATGCCTTTTATCGTCAAGATAGTCCTTTTTGTTC
back to top