FC920979

Overview
NameFC920979
Unique NameFC920979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length782
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14223 contig Ccv1_Contig14223:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920979 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.317e-44
Identity = 103/189 (54.50%), Postives = 129/189 (68.25%), Query Frame = 1
Query:  124 SVVAARVTGIR-KSGVYQFSSVK--YLPGTLQRNVSLSVRCMAKNEQQKDQ-----------STQPP-----KLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDVELWNGRFAMMGLVALAVTEFVKGSTL 633
            S+++  +T I  +S V QF+++   Y+P TL+RNVSL VR MA+ E ++             ST  P     + P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SD E WNGR AM+GLVALA TEFVKG++L
Sbjct:    8 SIMSNSMTNISSRSRVNQFTNIPSVYIP-TLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSL 195          
BLAST of FC920979 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.895e-33
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 1
Query:  205 LQRNVSLSVRCMAKN------EQQKDQSTQP------PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDVELWNGRFAMMGLVALAVTEFVKGSTL 633
            ++RN   +VR M ++      +QQK Q T        P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SD E+WNGRFAM+GLVALA TE+VKG  L
Sbjct:   41 MRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPL 196          
BLAST of FC920979 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.271e-29
Identity = 77/182 (42.31%), Postives = 100/182 (54.95%), Query Frame = 1
Query:   85 MAASLATQSMLGSSVVAARVTGIRKSGVYQFSSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDVELWNGRFAMMGLVALAVTEFVKGS 627
            MA  ++  S  G++VV        +S    F + + LP       +L  R +    Q +  S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++ ELWNGRFAM+GLVALA TE + G+
Sbjct:    1 MATMMSMSSFAGAAVVP-------RSSASSFGA-RSLP-------ALGRRALVVRAQTEGPSAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGA 167          
BLAST of FC920979 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.271e-29
Identity = 70/153 (45.75%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  175 FSSVKYLP-GTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDVELWNGRFAMMGLVALAVTEFVKGS 627
            F+    LP G+ +   +L  R +    Q +  +  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++ ELWNGRFAM+GLVALA TE + G+
Sbjct:   10 FAGAAVLPRGSARSLPALGRRTLVVRAQTEGPNAPPPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGT 162          
BLAST of FC920979 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.398e-28
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  271 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDVELWNGRFAMMGLVALAVTEFVKGS 627
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++D ELWNGRFAM+GLVALA TEF+ G+
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGA 226          
BLAST of FC920979 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.488e-14
Identity = 60/162 (37.04%), Postives = 75/162 (46.30%), Query Frame = 1
Query:  178 SSVKYLPGTLQRNVSLSVRCMAKNEQQKDQSTQPPKLPR--------ISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDVELWNGRFAMMGLVALAVTEFVKGSTL 633
            +S+   P  L R  +    C      + + ST PP  P          +   ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T D E+ NGRFAM+G  A+ V E ++G  L
Sbjct:   16 ASINVRPAPLLRTAAPKRVCKHIVRAENNPSTPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of FC920979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA5.317e-4454.50Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.895e-3349.36Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI9_HORVU1.271e-2942.31Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU1.271e-2945.75Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU2.398e-2853.97High molecular mass early light-inducible protein ... [more]
CBR_DUNBA7.488e-1437.04Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC32201F03EF RVDevelopN Citrus clementina cDNA clone C32201F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920979 ID=FC920979; Name=FC920979; organism=Citrus clementina; type=EST; length=782bp
GATCATCAAAATTGCAAGTAAGGAGCCCATTAACCTAAAAACTCCCAGTT
GCTAAATTATTCCTCCGTTGCATAATCTACAAAAATGGCTGCTTCACTCG
CCACTCAATCTATGCTTGGAAGCTCTGTCGTCGCAGCTCGTGTTACCGGC
ATCAGGAAATCTGGGGTGTACCAATTTTCCTCTGTTAAGTACTTACCTGG
TACTCTGCAGAGAAATGTTAGCTTATCAGTGCGCTGCATGGCTAAGAATG
AGCAGCAGAAGGATCAATCAACTCAGCCACCAAAGCTACCGCGTATAAGC
ACGAAGTTCTCTGACGTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGAT
AAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGCGGTGGAGC
TATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGAGTTGCC
TGGTTCTTGGGGACCAGTGTTCTGCTTTCGGTTGCGTCCCTGGTTCCTTT
GTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTCGG
ATGTTGAGTTGTGGAATGGGAGGTTCGCTATGATGGGTCTTGTTGCTTTG
GCTGTCACTGAGTTTGTTAAAGGCAGTACCCTTNGTTTAGTTAGTCCAAT
TTTCCAGTGATATGCGGACTGCAGAGTCTTGAAATGATAACAGACCCTAT
TCTAATACTTGAGCGCACGTCATGTTCTTCGTGGCTAATATGTGTATGAA
TATGTGGTGTGTATGTATCTCTGTTCCCATGC
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