FC920984

Overview
NameFC920984
Unique NameFC920984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length354
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:642..995. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920984 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.051e-20
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 RERNVTEAPLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGCRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 249
            R R+VT   L +AGF+ W KLIL+GS   G+TA  YKS  R  +  +G RI+GN GDQWSDLLG++   R+FKLP+PMYYI
Sbjct:  174 RHRSVTVENLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254          
BLAST of FC920984 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.285e-18
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 1
Query:   19 VTEAPLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGCRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYYI 249
            VTEA LK AGF+TWE+LILK        A+ YKS+ R+ L  +G RI+G IGDQWSDLLG + G +RTFKLP+PMYYI
Sbjct:  176 VTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQGYRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253          
BLAST of FC920984 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.883e-18
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   19 VTEAPLKHAGFNTWEKLILKGSSH-SGETAVVYKSSERKKLEMKGCRIIGNIGDQWSDLLGTNAG-NRTFKLPDPMYYI 249
            VTEA LK AG++TWEKLILK     S   AV YK++ R+KL  +G  I+G IGDQWSDLLG + G +RTFKLP+P+YYI
Sbjct:  175 VTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253          
BLAST of FC920984 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.018e-15
Identity = 45/75 (60.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   19 VTEAPLKHAGFNTWEKLILKGSSH-SGETAVVYKSSERKKLEMKGCRIIGNIGDQWSDLLGTNAG-NRTFKLPDP 237
            VTEA LK AG++TWEKLILK     S   AV YK++ R+KL  +G  I+G IGDQWSDLLG + G +RTFKLP+P
Sbjct:  172 VTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQGYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246          
BLAST of FC920984 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.245e-13
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   13 RNVTEAPLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGCRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 249
            +NVT   L+ AG   W+ LILK +  S    VVYKS  RK L  KG  I+GNIGDQW+DL+    G R FKLP+P+YY+
Sbjct:  187 KNVTLDNLEAAGVTYWKHLILKPNG-SNLRQVVYKSKVRKSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263          
BLAST of FC920984 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.176e-13
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   19 VTEAPLKHAGFNTWEKLILKGSSHSGETAVVYKSSERKKLEMKGCRIIGNIGDQWSDLLGTNAGNRTFKLPDPMYYI 249
            VT   LK  G   W+ LILK +  S  T VVYKS  R  L  KG  I+GNIGDQW+DL+    G R FKLP+P+YY+
Sbjct:  194 VTVENLKAVGVTKWKHLILKPNG-SKLTQVVYKSKVRNSLVKKGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268          
The following BLAST results are available for this feature:
BLAST of FC920984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC1.051e-2056.79Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPB_SOYBN1.285e-1861.54Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSPA_SOYBN4.883e-1860.76Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.018e-1560.00Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSP2_ARATH1.245e-1351.90Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH6.176e-1351.95Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC32201F09EF RVDevelopN Citrus clementina cDNA clone C32201F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920984 ID=FC920984; Name=FC920984; organism=Citrus clementina; type=EST; length=354bp
CTCAGCCGGGAGAGAAATGTTACAGAAGCTCCTTTAAAGCATGCTGGATT
CAACACTTGGGAGAAGCTCATCCTCAAGGGATCATCTCATTCAGGAGAAA
CAGCAGTGGTGTACAAATCAAGTGAAAGAAAGAAGCTTGAGATGAAAGGG
TGCAGAATTATTGGAAACATAGGTGATCAATGGAGCGATCTCCTGGGCAC
CAACGCCGGCAATCGGACGTTCAAGCTGCCTGACCCAATGTATTACATTG
GCTAATTAATAAATAATGTTTACTTGGGATTTTGAATAAATAATCGAAGG
GCCTTCATTTGTGCACCAAATTTGCTTACAAAAAAAAAAAAAAAAAAAAA
AAAA
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