FC920986

Overview
NameFC920986
Unique NameFC920986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920986_ssr204 microsatellite FC920986_ssr204:204..213. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig513 contig Ccv1_Contig513:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920986 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.976e-25
Identity = 58/72 (80.56%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIGG 294
            MGVFT+VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+PTSAVFQVI+GG
Sbjct:    1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTSAVFQVIVGG 71          
BLAST of FC920986 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.782e-25
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIGG 294
            MGVF++VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+PTSAVF V+IGG
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTSAVFVVVIGG 71          
BLAST of FC920986 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.020e-21
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIG 291
            MGV+T+VCR NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VTP+SAVFQVI+G
Sbjct:    1 MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQVIVG 70          

HSP 2 Score: 24.2534 bits (51), Expect = 2.020e-21
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  411 DEDMGFSLFD 440
            D+DMGFSLFD
Sbjct:  111 DDDMGFSLFD 120          
BLAST of FC920986 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 4.753e-20
Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   79 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVIIG 291
            MGV+T+VCR +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+P+SAVFQVIIG
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSSAVFQVIIG 70          

HSP 2 Score: 21.557 bits (44), Expect = 4.753e-20
Identity = 7/10 (70.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  411 DEDMGFSLFD 440
            ++D+GFSLFD
Sbjct:  110 EDDLGFSLFD 119          
The following BLAST results are available for this feature:
BLAST of FC920986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA31_ARATH3.976e-2580.5660S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA32_ARATH6.782e-2579.1760S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA3_MAIZE2.020e-2167.6160S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ4.753e-2066.2060S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC32201F11EF RVDevelopN Citrus clementina cDNA clone C32201F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920986 ID=FC920986; Name=FC920986; organism=Citrus clementina; type=EST; length=646bp
GAAGGAGGAAGAAGAGCCATCGTCTCTGTTTATCTAGTACATTGTGCCGC
TCAAAGACAAAAAGAATATCAAGTGAAAATGGGAGTTTTCACATACGTGT
GCAGAAAAAATGGGGGAGAATGGAGCGGAAAGCAGATAGAGGGGGGAGAC
TTAGAAGCCTCTGCAGCATCAACATACGAGCTCCAGAGAAAGCTGGTCCA
GACCTCTCTCTCTGCTGATTCTTCTGGTGGGGTCCAGTCCTCTTTCTCCC
TCGTCACACCTACGTCTGCTGTTTTCCAGGTGATTATTGGTGGTGCTTTG
GTAGTGGTTTCATTGGAGGTGGAGCTGCAGCTTCAGCCCCTTCAGGAGGC
GGTGGAGCAGCTGCTGAGGCTCCTGCTGCTGAGGAGAAGAAGGAAGAGAA
AGAGGAGAGTGATGAAGACATGGGTTTCTCTCTTTTTGATTAGGTTATAT
AATTCCAGTTCTCTTCTTGGGACTTGTATTTTGTTATGCTTTTATGTCGA
CTCAAAAATTGCTCTGCCATTGGCTTAGATTTTATTTTTGTGAGAGTTTT
GTTACTTTGTGAGGGATTTTTGTCCACCATCAATATTAAGTAAACATGAT
TAGCTTGCTGCTCCATGTCTATTACCAAAAAAAAAAAAAAAAAAAA
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