FC920987

Overview
NameFC920987
Unique NameFC920987
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920987_ssr531 microsatellite FC920987_ssr531:531..542. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig370 contig Ccv1_Contig370:323..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.221e-25
Identity = 53/88 (60.23%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNSSSTGSRD*AVCCXXXXXXRYQC 264
            QAMMTWN+TCTYSQFLAQ+TPTCCVSLSSF NET V CPTCACGCQNN TESG+C+    P + +  S  ++   V        R+ C
Sbjct:  211 QAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMC 298          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.033e-24
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNS 198
            QA+MTWNVTCTYSQFLAQKTP+CCVSLSSF N+T V+CPTC+CGCQNNGT  GSC+    P + ++
Sbjct:  211 QALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSA 276          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINN 195
            Q +MTWNV CTYSQFLAQK P+CCVSLSSF+N+ TV CPTC+CGC+N  + +G C+K   P++ +
Sbjct:  204 QVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQS 268          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.382e-21
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEI 189
            QA+MTWNVTCTYSQFLAQKTPTCCVSLSSF N+T VSCPTC+CGC+N  ++ G+C+    P I
Sbjct:  208 QALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNT-SQPGNCVDPKGPRI 269          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.307e-21
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNSSSTGSRD 219
            QA MTWNVTCTYSQ +AQ++PTCCVSLSSF N+T V+CPTC+CGCQNN  + GSC++   P + +  +T ++D
Sbjct:  203 QAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNN--KPGSCVEGNSPYLASVVNTHNKD 273          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.493e-20
Identity = 39/56 (69.64%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCI 168
            Q+++TWN+TCTYSQFLA+KTPTCCVSLS+F NET V CPTC+CGCQN+ +++G+C+
Sbjct:  203 QSLLTWNITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQNS-SQAGTCV 257          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALP---EINNSSSTGSRD*AVCC 234
            QA +TWNVTCTYSQF+AQ+ PTCCVSLSSF NET V+CP CACGCQN   + GSC++   P    + N    GS    V C
Sbjct:  205 QAHVTWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQNK--KPGSCVEGNSPYLASVVNGPGKGSLTPLVQC 283          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.726e-17
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIK 171
            QA+MTWNVTCTYSQFLA+K P+CCVS SSF N+T   CP+CACGC+N      SC+K
Sbjct:  195 QALMTWNVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCEN----KKSCVK 247          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 33/45 (73.33%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGC 135
            QA+MTWNVTCTYSQ LA K P+CCVS SSF N+T V C  CACGC
Sbjct:  196 QALMTWNVTCTYSQHLASKYPSCCVSFSSFYNDTIVPCAKCACGC 240          
BLAST of FC920987 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.821e-14
Identity = 45/96 (46.88%), Postives = 50/96 (52.08%), Query Frame = 1
Query:    1 QAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTE-SGSCIKNALP----EINNSSSTGSRD*AVCCXXXXXXRYQCAGV 273
            QA+MTW VTCTYSQ LA + PTCCVS SSF N T V C  CACGC ++G   +G   KNA         NS   G       C      R   AGV
Sbjct:  197 QALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGV 292          
The following BLAST results are available for this feature:
BLAST of FC920987 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBRA_ARATH1.221e-2560.23Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL3_ORYSJ1.033e-2471.21COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL4_ORYSJ2.382e-2161.54COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL1_ARATH2.382e-2171.43COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL1_ORYSJ5.307e-2160.27COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL2_ARATH4.493e-2069.64COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL2_ORYSJ1.001e-1958.02COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH2.726e-1766.67COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]
COBL6_ORYSJ2.821e-1473.33COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ2.821e-1446.88COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC32201F12EF RVDevelopN Citrus clementina cDNA clone C32201F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920987 ID=FC920987; Name=FC920987; organism=Citrus clementina; type=EST; length=613bp
CAAGCTATGATGACCTGGAATGTCACATGCACATATTCACAGTTCTTGGC
TCAAAAGACACCCACCTGTTGTGTTTCTCTCTCTTCCTTCAACAATGAAA
CAACGGTAAGCTGCCCAACGTGTGCTTGTGGCTGTCAAAACAATGGAACG
GAATCTGGGAGTTGCATAAAAAATGCATTGCCTGAAATCAACAACAGCAG
CAGCACGGGGAGCCGGGATTGAGCCGTATGCTGCAGTAGCAGTAGCAGTA
GCAGGTATCAATGTGCTGGTGTCATACAATGAATTAGACGGAACCCCTCT
TAATATCTCATCTTTCTCCACTGCAAGACCCTGTTATTGCCTTAGAACCA
ATGTCCAAAAGTGATCCAATAGAATTTTCTCCATTAATTTTTTTAATTTT
AAAATAAAACCAATAACCTTGGCAACCAGTTCAGTGAGCCTGTTTTGGGG
AGCTTCAGCATTTAAAGGCGTCATTGTGGCTGAAGCAACAGCATTTGCAG
CCTACAAAAAATTATCAATTTTGTTTTTCAGTGTGTGTGTGTATACTAAA
GATTTCGATAAAAGGAGACAAGGGGGTTGCCTGAGCAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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