FC920997

Overview
NameFC920997
Unique NameFC920997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9995 contig Ccv1_Contig9995:1..510. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.817e-31
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQIHEIKDFLLTARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.221e-29
Identity = 62/69 (89.86%), Postives = 67/69 (97.10%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQIHEIKDFLLTARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Sbjct:    1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.001e-26
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQIHEIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 1.647e-24
Identity = 53/69 (76.81%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.792e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.792e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 4.792e-24
Identity = 52/69 (75.36%), Postives = 64/69 (92.75%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 1.394e-23
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQD 260
            MP++I EIKDFLLTARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_ORNPR (60S ribosomal protein L38 OS=Ornithodoros parkeri GN=RpL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of FC920997 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.434e-22
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   57 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 263
            MPKQ+ EIK+FLLTARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKEFLLTARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70          
The following BLAST results are available for this feature:
BLAST of FC920997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARATH1.817e-3194.2060S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC2.221e-2989.8660S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_BRABE3.001e-2681.1660S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_MOUSE1.647e-2476.8160S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_RAT4.792e-2475.3660S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN4.792e-2475.3660S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN4.792e-2475.3660S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA1.394e-2375.0060S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_ORNPR3.434e-2274.2960S ribosomal protein L38 OS=Ornithodoros parkeri ... [more]
RL38_IXOSC3.434e-2274.2960S ribosomal protein L38 OS=Ixodes scapularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32201G11EF RVDevelopN Citrus clementina cDNA clone C32201G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920997 ID=FC920997; Name=FC920997; organism=Citrus clementina; type=EST; length=525bp
GGTGAAGCTCAAAGCTGCTCTTCCTCCTTTCTTTTGAAGAAGCTGCTTTA
ATCAAAATGCCTAAACAGATCCACGAGATCAAGGATTTCCTTCTTACTGC
AAGAAGGAAGGATGCCCGTTCTGTAAAAATCAAGAGGAGCAGGGATGTTG
TTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACACTCTGTGTTTTT
GACTCTGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCTCCAGGTTTGAG
CGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGTGGGATCAGAAG
TTGATGAAATTTGTTTCGCACTTTCTACCTCGAAATTGTTAGGCCTTACA
AATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTTTTTTTATTAGT
TTTCTTGGGAATTTTCTCCAAAAATTTCGTTCTAATGAGTTTGAGTTGTA
TATCACCTTAGTGGTTTTTTATCGATCAAGTCGGAACATGTCTATTTTTA
AAAAAAAAAAAAAAAAAAAAAAAAA
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